Pairwise Alignments

Query, 452 a.a., transcriptional regulator, GntR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 472 a.a., transcriptional regulator from Sinorhizobium meliloti 1021

 Score =  142 bits (357), Expect = 3e-38
 Identities = 119/434 (27%), Positives = 189/434 (43%), Gaps = 36/434 (8%)

Query: 3   TIWIPDLDVFVGPKYQRLVSAIEQGILQKELPHGTKLPPQRRLADALGVTIGTVTRAYAL 62
           T W+PD++   GP Y R+   IE+ I    LP GTKLPPQR LA  +GVTIGT+ RAY +
Sbjct: 2   TTWLPDIEQGHGPLYARIADQIEEAIGNGTLPAGTKLPPQRNLAFDVGVTIGTIGRAYGI 61

Query: 63  AEQRGYVEARIGDGTYVNASP---VPEMANLQLNMATCQQPLTDQISTL----------- 108
             +RG V   +G GTYV   P    PE ++      +  +PL      L           
Sbjct: 62  VRERGLVSGEVGRGTYVLDHPESRPPEQSDPLTTSLSGTRPLIAPAGKLRFDSTAAPDIG 121

Query: 109 -SDCLSLLAKDPTK--LSQLLGYRANPLDQHQQTFHHWLKQRGIEQQSEQLIFTHGGQQA 165
             D L+ L  D ++     +  Y  N  D   +    WL +       E ++ T G   A
Sbjct: 122 QGDILAQLLGDISREHHGDIASYARNFPDHWFEAGSQWLARGNFRPGPETVVPTLGAHAA 181

Query: 166 IFACLNAFLTKGDVLLHEQYCYPGIRICAKQLGINSIGVPLTSEGVDLVRFEALVQIHRP 225
           + A ++A  + GD +  E   Y  I   A  +G     V     G+    FE +     P
Sbjct: 182 VVAVISAVTSPGDRIAFETLTYSQISRSAGLIGRRIALVESDEFGMRPEDFERVCAQQHP 241

Query: 226 KLIYLTLNNQNPTCIQYSEQQRQQLLELAQQYQFYIIEDDVNYCLPEEWHSPLWQLAQVL 285
           KL +L    QNPT       +RQ + ++A++Y  +++ED++   +  +    L +LA   
Sbjct: 242 KLAFLMPGAQNPTVAVMPLDRRQAIADIARKYGVWLVEDNLYGSMTGDPLPLLMELAP-- 299

Query: 286 NIQRVIYISSLSKLFSGGLRQGFILVPEPLIAALRLAIHSQCWMVSPLNVELACQLIKRG 345
             +R   +  LSK  + G+R G++  P      +R+A       +  +  EL  +L+  G
Sbjct: 300 --ERTFLVGGLSKSVAAGVRGGWVACPPHFSQRIRVAHKMVSGGLPFILAELCARLVLSG 357

Query: 346 HITANRDAIIRERQQQCIALGQRLGLTQRWRGLN---------GWIQLPEDIKAHHLVTA 396
                  +++R R  + I   + L   + + G +          W++LPE   +     A
Sbjct: 358 SA-----SVLRNRGAEEIGAREALA-REIFTGFDFNSHPKIPFFWLKLPEPWLSGTFKQA 411

Query: 397 LAAKGVLIRHGDDF 410
              +GVLI   D+F
Sbjct: 412 ALQEGVLIDDEDEF 425