Pairwise Alignments

Query, 452 a.a., transcriptional regulator, GntR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 467 a.a., regulatory protein GntR (NCBI) from Rhodospirillum rubrum S1H

 Score =  142 bits (358), Expect = 2e-38
 Identities = 127/439 (28%), Positives = 187/439 (42%), Gaps = 27/439 (6%)

Query: 5   WIPDLDVFVGPKYQRLVSAIEQGILQKELPHGTKLPPQRRLADALGVTIGTVTRAYALAE 64
           W+P L     P ++ +   +E  I    LP GT+LPPQR LA  L VT+ TV RAYALA 
Sbjct: 6   WMPVLPEGRRPLHRAIAEVLEADIAAGRLPPGTRLPPQRDLAWRLKVTLATVGRAYALAR 65

Query: 65  QRGYVEARIGDGTYV-------NASPVPEMA----NLQLNMATCQQPLTDQISTLSDCLS 113
           +RG +   +G GT+V         +P P  A    N  +++A            ++ C  
Sbjct: 66  ERGLIGGEVGRGTFVLGETTSAGLAPWPPQAGAGENGAIDLANTHPAPVAGPGEVAACAR 125

Query: 114 LLAKDPTKLSQLLGYRANPLDQHQQTFHHWLKQRGIEQQSEQLIFTHGGQQAIFACLNAF 173
            L +  T +       A P   H+     WL  +G+   +E ++ + G    + A L A 
Sbjct: 126 ALVEAGTGIFAYQPDTAAP--DHRDAAARWLTAQGVPAGAESVLLSTGALNGVLAALMAL 183

Query: 174 LTKGDVLLHEQYCYPGIRICAKQLGINSIGVPLTSEGVDLVRFE-ALVQIHRPKLIYLTL 232
              GD +L E    P  +  A  LG+    V    EG+     E AL +    KL+    
Sbjct: 184 ARPGDTVLTEALTSPAFKGMAALLGLRLRAVASDGEGLRPEALEAALERDPSAKLLLCVP 243

Query: 233 NNQNPTCIQYSEQQRQQLLELAQQYQFYIIEDDVNYCLPEEWHSPLWQLAQVLNIQRVIY 292
              NPT    S ++R  L  LA+++   IIED V   L E     L    + L   RV +
Sbjct: 244 ALHNPTGATLSAERRLSLTALAERFDLTIIEDAVYAPLIENGPPSL----KALMPDRVTH 299

Query: 293 ISSLSKLFSGGLRQGFILVPEPLIAALRLAIHSQCWMVSPLNVELACQLIKRGHIT---- 348
           ++SLSK+   GLR G ++ P     A+  A+   CWM  P    +A + +  G +T    
Sbjct: 300 VTSLSKIGLPGLRCGMVVPPTRRREAVLAALRVSCWMAPPPLAAVAARWMDDGTVTRLIA 359

Query: 349 ANRDAIIRERQQQCIALGQRLGLTQRWRGLNG-WIQLPEDIKAHHLVTALAAKGVLIRHG 407
           A R A+   R      LG RL         +  W+ LP   +      AL  +GV++  G
Sbjct: 360 AQRLAVSERRALADRLLGDRLTCRPPPPAASFLWLALPAGWRGDDFAHALHRRGVMVTPG 419

Query: 408 DDFNCH----DNFIRLSLG 422
           + F          +RL LG
Sbjct: 420 EAFTVDTAHAPQAVRLCLG 438