Pairwise Alignments

Query, 452 a.a., transcriptional regulator, GntR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 501 a.a., DNA-binding protein from Burkholderia phytofirmans PsJN

 Score =  114 bits (284), Expect = 9e-30
 Identities = 117/439 (26%), Positives = 183/439 (41%), Gaps = 53/439 (12%)

Query: 15  PKYQRLVSAIEQGILQKELPHGTKLPPQRRLADALGVTIGTVTRAYALAEQRGYVEARIG 74
           P Y++L   ++Q IL +ELP G+K+P  R LA  LG+   TVT+ Y      GYV +  G
Sbjct: 21  PIYRQLHRLLQQAILSRELPPGSKVPSSRLLAQELGIGRNTVTQVYEQLVLEGYVSSATG 80

Query: 75  DGTYV-------------------NASPVPEMANLQLNMATCQQPLTDQIST-------- 107
            GT+V                    + P P+ A   L+    +      +S         
Sbjct: 81  RGTFVADSAPDEIVGVPDAEAPAARSEPAPQQARRALSTRGARLIAGAGVSKRQWGAFMP 140

Query: 108 -LSDCLSLLAKDPTKLSQLLGYRANP----------LDQHQQTFHHWLK-QRGIEQQSEQ 155
            + D     A+  ++L      R  P          L   +     +L+  R +    EQ
Sbjct: 141 GVPDVTKFPARVWSRLHNKYWRRLRPDLLTYAPGGGLASLRHALADYLRTSRSVRCTPEQ 200

Query: 156 LIFTHGGQQAIFACLNAFLTKGDVLLHEQYCYPGIRICAKQLGINSIGVPLTSEGVDLVR 215
           +I T G  Q++   +      GDV+  E  CY G+R      G+ S  + +  EG++   
Sbjct: 201 IIITTGIHQSVDLAVRLLSDPGDVIWTEDPCYWGVRSVLHVSGLESRPIAVDEEGIN-PS 259

Query: 216 FEALVQIHRPKLIYLTLNNQNPTCIQYSEQQRQQLLELAQQYQFYIIEDDVNYCLPEEWH 275
            + L Q   PKL+ +T ++Q P  +  S  +R+ LLE A+Q   +IIEDD  Y     + 
Sbjct: 260 ADDLAQ--PPKLMLVTPSHQYPLGMVMSLARRRMLLEYARQNLCWIIEDD--YDSEYRYG 315

Query: 276 S-PLWQLAQVLNIQRVIYISSLSKLFSGGLRQGFILVPEPLIAALRLAIHSQCWMVSPLN 334
           S PL  L  +    +VIY+ S  K    GLR G+++VPE L  +   A          L 
Sbjct: 316 SRPLASLQGLDTSGQVIYVGSFGKTLFPGLRIGYLVVPEALAESFATASAELYREGQLLQ 375

Query: 335 VELACQLIKRGHITAN----RDAIIRERQQQCIALGQRLG----LTQRWRGLNGWIQLPE 386
             +  + I  GH T++    R    + RQ    A  QR G          GL+  +QLP+
Sbjct: 376 QAMLAEFIAEGHFTSHIRKMRTLYGQRRQTLLDAAAQRYGDALPAVGGDAGLHLVMQLPD 435

Query: 387 DIKAHHLVTALAAKGVLIR 405
                 +  A   + +++R
Sbjct: 436 GTDDRRVAAAALERNIVVR 454