Pairwise Alignments

Query, 416 a.a., lipoprotein releasing system transmembrane protein LolC, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 410 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 73/335 (21%), Positives = 138/335 (41%), Gaps = 30/335 (8%)

Query: 91  ITAAAPFIRMQGLVQKPGGFQGLAVVGIDPEQEAKVSTLSQFMSPETWQSLSEDDNHIVL 150
           I+ A P I    L       +G+ V G+ P+ E+  S +   +    +  L+     ++L
Sbjct: 90  ISYALPRIESFLLASSEERSKGVLVYGVRPQLESDYSGIDDKLVAGRY--LTPGAQQVLL 147

Query: 151 GESLLKKLGLEVGDTLALYVQDLDPEHAGSLRAAKSHRFVVSGVYRLGG-------ELEL 203
           G+ L + L L VGD L LY Q               H    +GVY + G       +L+ 
Sbjct: 148 GQGLAEYLKLGVGDELVLYGQGY-------------HGQTAAGVYPIAGILHFPLAQLDN 194

Query: 204 TTAYIPMRYAANILNLHQGVTGVRISVTQVFEAPAKIRELGYALNQSVYISDWTRTQGHL 263
              Y+P+  A  + +  + VT   +    + E       L       V + DW      +
Sbjct: 195 QLVYMPLSAAQGLFSTGEQVTSWVLHSDNLDEVAPLTERLSNLYGDRVKVRDWQSLAPEM 254

Query: 264 YQDIQLVRT---IMYLVLVLVIGVACFNIVSTLVMAVRDKASEIAILMTMGLSRLSVMGI 320
            Q I L R     M  +L L++G A F   +T++M   ++  E  +++  G++RL+++ +
Sbjct: 255 AQQIALDRAGGLFMICLLYLIVGFALF---ATILMMTLERRREFGVVLATGMARLTLLRL 311

Query: 321 FMVQGALNGLVGCALGGVIGIATAINLSAIARDIEQLLGIQLLSADVYFVDFLPSELHMA 380
            M++  L   +G ALG  +G+++ +        I        +  ++ +   +P ++ +A
Sbjct: 312 VMIESLLIAALGTALG--LGVSSVVIGYFYYHPISLTGETAKMMLEMGWEPVMPMKVSLA 369

Query: 381 DVSLVIATAFVMSLIATLYPAWKASRIGPAQALAG 415
            V   +     +  +   YP W+   +    AL G
Sbjct: 370 LVRNQVIIILSLMALCLCYPLWRTQHLVVVAALKG 404