Pairwise Alignments

Query, 416 a.a., lipoprotein releasing system transmembrane protein LolC, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 18/161 (11%)

Query: 259 TQGHLYQDIQLVRTIMYLVLVLVIGVACF----NIVSTLVMAVRDKASEIAILMTMGLSR 314
           T   L + I  +  ++ + LV V G++       I +T+ M++ ++  +I IL  +G   
Sbjct: 250 TAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTMHMSILERRKDIGILKALGAEN 309

Query: 315 LSVMGIFMVQGALNGLVGCALGGVIGIATAINLSAIARDIEQLLGIQLLSADVYFVDFLP 374
            +++ IF+V+    GL G  +G ++GI  A  +  IA     + G  L+ A      ++ 
Sbjct: 310 TTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIA----AISGYGLIRA------WIS 359

Query: 375 SELHMADVSLVIATAFVMSLIATLYPAWKASRIGPAQALAG 415
            EL +     V+  +FV+ +++  +PA   +++ P   L G
Sbjct: 360 WELIVG----VLVFSFVVGILSGYFPARSGAKLNPVDTLRG 396