Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

 Score = 1072 bits (2771), Expect = 0.0
 Identities = 572/1151 (49%), Positives = 781/1151 (67%), Gaps = 10/1151 (0%)

Query: 8    TPPVVKNGT-QMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLA 66
            +PP+ K+G  +    +  +    A ++A     H G  L++  D  +A  +E +L+ LL 
Sbjct: 8    SPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLG 67

Query: 67   K-TAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPK 125
              +A+ V  FPD ETLPYD FSPH ++ISQRL  L ++      VVIVPV TL+ +L P 
Sbjct: 68   DASALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPL 127

Query: 126  SYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPL 185
            SY+    F L  G +  L   +++L   GY  V QV + G+FA+RG +LD+FP G + PL
Sbjct: 128  SYIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADTPL 187

Query: 186  RIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVK 245
            RIEL D+++++IR FDPE+QRS   V+AV++LP +E P D +++E      R RF+V  +
Sbjct: 188  RIELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRERFDVDTR 247

Query: 246  EPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEVE 305
               ++YQ +   + P+G+E YLP+FF + +TLFDYL      +    +  +A A   + +
Sbjct: 248  R-SALYQDLKSGIAPSGVEYYLPMFFSKTATLFDYLDTRVLPLIATGVSNAADAFWLQAQ 306

Query: 306  IRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPE 365
             RYE RR D  RPLL P ELY   + L      L R +    +   +  AA +  + LP 
Sbjct: 307  NRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPADHPRSDEAAPLGDQPLPP 366

Query: 366  VSANHKLKQPLIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQ 424
            +    K      AL  +    P R+L +A+S GRREAL+E+L   QLKP V +    F+ 
Sbjct: 367  LPVAAKDAPAGQALASFLGHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVADLPAFLA 426

Query: 425  SDA-RLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIKN 483
            +   R G+ V+PL  G  L       ++++ E +LF +R +Q RR  +  +   + +I++
Sbjct: 427  ATKLRFGITVAPLEDGFALDT---PQIAVLTERQLFPERANQPRRTRRVGR-EPEAIIRD 482

Query: 484  LAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYS 543
            L EL  G PIVH +HGV  Y+GL+ LD GG+  E+L++EY+ GD+LYVPV+ LHLISRYS
Sbjct: 483  LGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRYS 542

Query: 544  VGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQF 603
              +     L+ LG + W KAK KA EK+RDVAAELL++ ARR+AR G + +++   Y  F
Sbjct: 543  GASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYEPF 602

Query: 604  AQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVV 663
            A GFPFEET DQ +AI A L D+ S   MDR+VCGDVGFGKTEVA+RAAF A + GKQV 
Sbjct: 603  AAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVA 662

Query: 664  VLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKL 723
            VLVPTTLLA+QHY NF+DRFAD+P+ +EV+SRF++ KE    L+++  G +D++IGTH+L
Sbjct: 663  VLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRL 722

Query: 724  LQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDL 783
            LQ + KF++LGL+++DEE RFGVRQKE +KA+RANV +LTLTATPIPRTLNMAM+G+RDL
Sbjct: 723  LQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDL 782

Query: 784  SIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLL 843
            SIIATPP  RLAV+TF+   D   +REA  RE+ RGGQ+Y+LHN+VE+I +  +D+S L+
Sbjct: 783  SIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSELV 842

Query: 844  PEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGL 903
            PEAR+ +AHGQM ER+LERVM DF  QRFNVL+ TTIIE+GID+P+ANTIII RAD FGL
Sbjct: 843  PEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGL 902

Query: 904  AQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIR 963
            AQLHQLRGRVGRSHH+AYAYL+ P  + MT+DA KRLEAI ++++LGAGF LAT DLEIR
Sbjct: 903  AQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLEIR 962

Query: 964  GAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSL-AQMLNQQCEMELRIPALL 1022
            GAGELLG++QSG ++++GFSLY E+LE AV++++QGK P L A    +  E+EL + +L+
Sbjct: 963  GAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAEVELHVASLI 1022

Query: 1023 PEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATR 1082
            PEDY+ DV+ RL+LYKRI+S    +AL EL+VE+IDRFGLLPD  K+L  +   K QA  
Sbjct: 1023 PEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQANA 1082

Query: 1083 LGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRL 1142
            LG  K+++   GG + F    SIDP  +I ++Q QP+IY MDGP+KL+  L    A DR 
Sbjct: 1083 LGVRKLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAADRF 1142

Query: 1143 ALVKLLLEQLS 1153
               + LL  L+
Sbjct: 1143 KAARGLLTALA 1153