Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1153 a.a., transcription-repair coupling factor from Synechococcus elongatus PCC 7942

 Score =  630 bits (1624), Expect = 0.0
 Identities = 383/1078 (35%), Positives = 590/1078 (54%), Gaps = 43/1078 (3%)

Query: 27   VGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIKVRLFPDRETLPYDSF 86
            + Q +  ++L++    + L++ +    A     +L  +   T   +  +P  E+ PY++F
Sbjct: 37   LAQGLVTSALVQAQSRSLLVICATLEEAGRWAAQLEGMGWPT---LHFYPTSESSPYEAF 93

Query: 87   SPHQDLISQRLETLSQITHAEHSVVIVPVT-TLMMRLPPKSYLSSNVFVLKKGDKYQLHD 145
             P  +L+  +L+ L+ +      V IV    +L   LPP   L      L++G +  L +
Sbjct: 94   DPESELVWGQLQVLADLLEQSQPVAIVATERSLQPHLPPVEALRPFCQTLQRGQEVNLGE 153

Query: 146  VRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFDDEVETIRHFDPETQ 205
            +  +    GY  V+ V   G+++ RG I+D+FP    +P+R+ELF DE+E +R FDP TQ
Sbjct: 154  LADRFAQFGYERVDTVETEGQWSRRGDIIDLFPVSAELPVRLELFGDELERLREFDPATQ 213

Query: 206  RSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVYQLVSRNLMPAGIEN 265
            RS   +  +RL P       ++A+       R   + + +  +  +Q       P G+  
Sbjct: 214  RSLDEIEVLRLTPTSYASVIAAALAD-----RSLDDWLTEAEQEAWQ---EGQPPEGMRR 265

Query: 266  YLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYEDRRVDPLRPLLAPKEL 325
            +L + F+  ++L DYLP  T +    D     RAH        +D   +  +   A    
Sbjct: 266  FLGVAFERSASLLDYLPAGTVIAI--DEPLQCRAHSDRWIEHVQDHWQEQAQVWPAIHRD 323

Query: 326  YLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSANHKLKQPLIALQDYAEQ 385
            +    E    F+ +   Q  + + D+      + AR+LP +   H+  +    ++   ++
Sbjct: 324  FQAAWEEIRCFQRIELSQLNSSS-DSELPVLDLAARSLPVLP--HQFGKLADFIRTERDR 380

Query: 386  APRMLFSAESEGRREALLE---LLGKIQLKPSVFSHFDEFIQSDARLGLIVSPLSRGCLL 442
                L SA+   R  ALL+      +    P  +   D   +    + L  S L+   L 
Sbjct: 381  HSIWLVSAQPS-RMVALLQEHDCPSQFIPNPRDYPAIDRLSEKRVPIALKHSGLAE--LE 437

Query: 443  GLGAQT-AVSIICETELFGQRIS------QQRRREKQRQISNDTLIKNLAELKVGQPIVH 495
            G    T  +++I + E FGQ +       ++RRR   +Q+  D        LK G  +VH
Sbjct: 438  GFSLPTFRLTLITDRECFGQHVLASPTYVRKRRRAASKQVDRD-------RLKPGDYVVH 490

Query: 496  LEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGETHLNKL 555
              HG+  +  L +L   G + EYL L+Y+ G  L V    +  +SRY         L+ +
Sbjct: 491  RSHGIGRFVKLESLSLSGEMREYLVLQYADG-LLRVAADQMGSLSRYRGMGGERPELSSM 549

Query: 556  GNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPFEETVDQ 615
             +  W K K KA + +R VA +LL +YA+R  + G +   +     +  + FP++ T DQ
Sbjct: 550  TSKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAYPPDQPWQQELEESFPYQPTADQ 609

Query: 616  ESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQH 675
              A+ AV  DM+SP  MDRLVCGDVGFGKTEVA+RA F AV  GKQV +L PTT+L QQH
Sbjct: 610  LKAVEAVKRDMESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTILTQQH 669

Query: 676  YENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGL 735
            Y   K+RFA +P+ I +++RFRTA E+  + ++L  G++D+V+GTH+LL    +F +LGL
Sbjct: 670  YHTLKERFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGTHQLLSKGTQFRDLGL 729

Query: 736  LIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLA 795
            L++DEE RFGV QKEKIKAL+  VD+LTL+ATPIPRTL MA+SG+R++S+I TPP  R  
Sbjct: 730  LVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRP 789

Query: 796  VKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQM 855
            +KT +   D   VR AI +EI RGGQV+Y+   VE IE  A  +  +LP  R+ VAHGQM
Sbjct: 790  IKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEGIEAIATRLQEMLPSLRIAVAHGQM 849

Query: 856  RERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGR 915
             E +LE  M  F +   +V++CTTIIE+G+D+P  NTI+IE A  FGL+QL+QLRGRVGR
Sbjct: 850  PEGELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFGLSQLYQLRGRVGR 909

Query: 916  SHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSG 975
            +  QA+A+L  P    ++  AR+RL AI     LG+G+ LA +DLEIRG G LLG EQSG
Sbjct: 910  AGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEIRGVGNLLGVEQSG 969

Query: 976  HISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGDVNIRLS 1035
             +  IGF LYMEML+ +++ ++    P +        +++L + A +P DY+ D++ ++S
Sbjct: 970  QMEAIGFDLYMEMLQESLQEIRGQDIPQV-----DDTQIDLSLTAFIPADYIPDIDAKMS 1024

Query: 1036 LYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIEVHAK 1093
             Y+ +AS  +   L ++  +  DR+G LP + + L+ +   K  A  LG  +I   +K
Sbjct: 1025 AYRAVASAQTPADLLQIAADWSDRYGSLPASAQQLLRVMELKQVAKSLGFARIRTESK 1082