Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1152 a.a., transcription-repair coupling factor from Rhodanobacter denitrificans MT42

 Score = 1135 bits (2937), Expect = 0.0
 Identities = 597/1148 (52%), Positives = 795/1148 (69%), Gaps = 13/1148 (1%)

Query: 9    PPVVKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKT 68
            PP+  +  Q +  +   G  +A+ LA   R H G  ++V  DT  A +LE EL       
Sbjct: 8    PPLPTSPKQRRYWTPPHGSARALLLAEAARAHGGLLVVVARDTQRAQALEAELKIFAG-- 65

Query: 69   AIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYL 128
             + V  FPD ETLPYD FSPH +++SQR+ TL ++   +  V++VPV TLM R+ P S++
Sbjct: 66   GLPVLHFPDWETLPYDVFSPHPEIVSQRVATLYRLPGVKRGVLVVPVATLMQRIAPHSHI 125

Query: 129  SSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIE 188
            + +  VL KG K  L   +++L  +GY  V QV E G+FA+RG++LDIFP G   P RIE
Sbjct: 126  TGSGLVLAKGQKLDLAGEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIE 185

Query: 189  LFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPE 248
            LFDDEVE+IR FDPETQRS  PV+ V LLPA+EFP    A + FR   R RF + V+   
Sbjct: 186  LFDDEVESIRSFDPETQRSQQPVDRVELLPAREFPLTEEAAKEFRGNLRERFPIDVRRCP 245

Query: 249  SVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRY 308
             +YQ +   + P GIE YLPLFF + +TLFDYL  +   V      ++A     +   RY
Sbjct: 246  -LYQDMKEGVTPGGIEYYLPLFFAQTATLFDYLADDALFVLGEGAGEAADQFWAQTAERY 304

Query: 309  EDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSA 368
            + R  D  RP+L P ELYL  E+L        R + V P  +    A     +  PE+  
Sbjct: 305  DQRAHDIERPVLPPAELYLPPEQLRERLNKRLRVEVVEPGHEH---AVDTGTQPAPELPL 361

Query: 369  NHKLKQPLIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDA 427
            N K ++P  +L+ +    P R+L +A+S GRREAL+E L    +KP     +  F+  DA
Sbjct: 362  NRKGEEPGTSLRHFLASYPGRVLIAADSAGRREALVETLAGAGMKPDNVDGWTSFLAEDA 421

Query: 428  -RLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISND--TLIKNL 484
             R  + ++ L +G  L    + A++++ E EL+G+R+  +R R+++R  + D   +I++L
Sbjct: 422  QRFAITIASLEQGFAL---TKPAITVLTERELYGERVRSERERKRRRGTARDPEAIIRDL 478

Query: 485  AELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSV 544
             EL  G PIVH++HGV  YQGLV++D GG+  E+L +EY+ GDKLYVPV+ L L+SRYS 
Sbjct: 479  TELTPGAPIVHVDHGVGRYQGLVSMDVGGMDGEFLTIEYARGDKLYVPVAQLGLVSRYSG 538

Query: 545  GADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFA 604
             A     L+ LG D W +A+ KA EK+RDVAAELL +YA+RQAR GES  I+ +   +F 
Sbjct: 539  TAPELAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVEEFG 598

Query: 605  QGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVV 664
              FPFEET DQESAI AVL D+ +P AMDR++CGDVGFGKTEVA+RAAF     G+QV V
Sbjct: 599  SSFPFEETPDQESAIEAVLDDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGRQVAV 658

Query: 665  LVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLL 724
            LVPTTLLAQQHY NF DRFADWPV ++V+SRF++AKE  + LK+L +G++D+++GTHKLL
Sbjct: 659  LVPTTLLAQQHYRNFADRFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVGTHKLL 718

Query: 725  QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 784
            Q + KF+NLGL+I+DEE RFGVRQKE++K LRA VD+LT+TATPIPRTLNMAM+G+RDLS
Sbjct: 719  QPDVKFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLS 778

Query: 785  IIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLP 844
            +IATPPA R AV+TF+   DPAT+REA+ RE+ RGGQVY+LHN V++IE+  +++  L+P
Sbjct: 779  LIATPPAHRTAVRTFISAWDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEELVP 838

Query: 845  EARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLA 904
            +AR+ +AHGQM ER+LE VM+DF+ QRFNVLVCTTIIETGID+P+ANTIII+RAD FGLA
Sbjct: 839  DARIRIAHGQMPERELEGVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLA 898

Query: 905  QLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRG 964
            QLHQLRGRVGRSHH+AYAYL+ P  + +T DA+KRLEA+ +LE+LGAGF LAT DLEIRG
Sbjct: 899  QLHQLRGRVGRSHHRAYAYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRG 958

Query: 965  AGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPE 1024
            AGELLGDEQSG I +IGF LY E+L+ AV+ALK GK P        + E+EL +PAL+P+
Sbjct: 959  AGELLGDEQSGQIQEIGFGLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLPALIPD 1018

Query: 1025 DYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLG 1084
            DY+ DV+ RL+LYKRIAS  SE+ L +L+VE+IDRFGLLP+ T+ L  +   K  AT LG
Sbjct: 1019 DYLPDVHHRLTLYKRIASARSEDELRDLQVEMIDRFGLLPEPTRQLFAVASLKLMATPLG 1078

Query: 1085 ATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLAL 1144
              K++  A GG I F +   ++P  II L+Q QP++Y++DG +KLK IL    A +R+  
Sbjct: 1079 IRKLDFGANGGRIVFREKPEVNPMTIIQLIQRQPRVYKLDGQDKLKVILELPGASERIRS 1138

Query: 1145 VKLLLEQL 1152
             + LL  L
Sbjct: 1139 AQELLVML 1146