Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1147 a.a., transcription-repair coupling factor from Ralstonia solanacearum IBSBF1503

 Score = 1053 bits (2724), Expect = 0.0
 Identities = 577/1134 (50%), Positives = 754/1134 (66%), Gaps = 26/1134 (2%)

Query: 4    ISALTPPVVKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTT---LIVTSDTPTALSLELE 60
            +SAL  P+VK G Q    S + G   A+ LA  + QH+ T     +V ++   A  L  E
Sbjct: 10   LSAL--PIVKPG-QRFVFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADE 66

Query: 61   LNYLLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMM 120
            L +   +   +V+L PD ETLPYD+FSPHQDLIS+RL TL  +      +++VP +T + 
Sbjct: 67   LRWFAPQA--RVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPASTALQ 124

Query: 121  RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180
            R+ P S+L++  F  KKG++     ++ Q T  GY  V  V   GE+++RG ++D+FP G
Sbjct: 125  RIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG 184

Query: 181  VNMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRF 240
              MP R++LF DE+ETIR FDP+TQRS  PVN VRLLP +EFP D +A   FR R+R  F
Sbjct: 185  SPMPYRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAFRGRWREVF 244

Query: 241  EVIVKEPES--VYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSAR 298
            E    +P    +Y+ +   +  AGIE YLPLFF+E +TLFDYLP    L  +GDIE + R
Sbjct: 245  E---GDPTRAPIYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPATAHLALVGDIEAAVR 301

Query: 299  AHLQEVEIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQI 358
                +   RY   R D  RPLLAP  LYL  E  F A KP  R    A   D        
Sbjct: 302  RFWADTTQRYNFMRHDRDRPLLAPPALYLDEEAFFVAAKPHARLVLRAEADDAPL----- 356

Query: 359  DARALPEVSANHKLKQPLIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPSVFS 417
             +  LP V+ N + + PL+ L+ +  +   R++  AES GRRE L ++L    L P   +
Sbjct: 357  -SLPLPNVAVNRRAEDPLVNLEAFLMRGNCRVMICAESAGRRETLAQMLAASGLHPEGVA 415

Query: 418  HFDEFIQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISN 477
               + +  +AR  L V+PL +G +LG      ++ I ETEL+ Q + +  RR++++  + 
Sbjct: 416  DCADLMGGEARFVLGVAPLYQGFILG---DERIAFITETELYAQAVRRSGRRKQEQATAV 472

Query: 478  DTLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLH 537
            D ++++LAELK+G P+VH EHG+  YQGLV++D G    E+L L+Y  G KLYVPV  LH
Sbjct: 473  DAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQLH 532

Query: 538  LISRYSVGADGETH-LNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEIN 596
            +ISRYS GAD +T  L++LG+  W KAK +A ++IRD AAELL++YARR  R G +  + 
Sbjct: 533  VISRYS-GADPDTAPLHQLGSGQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLT 591

Query: 597  DEEYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAV 656
              +Y  FA+ F F+ET DQ +AI AV+ADM S   MDRLVCGDVGFGKTEVA+RAAFVAV
Sbjct: 592  PNDYEAFAESFGFDETPDQAAAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAV 651

Query: 657  NDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDI 716
              GKQV +L PTTLLA+QHY+   DRFADWPV I  +SRF+  KE    ++ +  G +DI
Sbjct: 652  MGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDI 711

Query: 717  VIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMA 776
            VIGTHKLL  + +F+ LGL+IIDEEHRFGVRQKE +K LRA VD+LTLTATPIPRTL MA
Sbjct: 712  VIGTHKLLSPDVQFDRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMA 771

Query: 777  MSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCA 836
            + G+RD S+IAT P KRLA+KTFVR  + + +REAILRE+ RGGQVY+LHN VETIE   
Sbjct: 772  LEGLRDFSVIATAPQKRLAIKTFVRREEDSVLREAILRELKRGGQVYFLHNEVETIENKR 831

Query: 837  QDISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIE 896
              +  L+PEARV VAHGQM ER+LERVM DF  QR N+L+CTTIIETGIDVP+ANTI+I 
Sbjct: 832  AKLEALVPEARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIH 891

Query: 897  RADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLA 956
            RAD FGLAQLHQLRGRVGRSHHQAYAYL+    + +T  A++RLEAI  +E+LG+GF LA
Sbjct: 892  RADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLA 951

Query: 957  TQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMEL 1016
              DLEIRGAGE+LGD+QSG IS+IGF LY +ML  AVK+LK GKEP L   L    E+ L
Sbjct: 952  MHDLEIRGAGEVLGDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINL 1011

Query: 1017 RIPALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLY 1076
              PALLP DY GDV  RLSLYKR+A+C+S E +D ++ ELIDRFG LP   ++L+E    
Sbjct: 1012 GTPALLPNDYCGDVQERLSLYKRLANCESGETIDNIQEELIDRFGKLPPQAQSLIETHRL 1071

Query: 1077 KHQATRLGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLK 1130
            +  A  LG  KI+      +++F  +  +D   II L+Q   QI ++ G ++L+
Sbjct: 1072 RIAAVPLGIRKIDTGPDAVTLQFVPNPPVDAIKIIDLVQKNRQI-KLAGQDRLR 1124