Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1172 a.a., transcription-repair coupling factor from Rhodopseudomonas palustris CGA009

 Score =  743 bits (1918), Expect = 0.0
 Identities = 443/1131 (39%), Positives = 653/1131 (57%), Gaps = 42/1131 (3%)

Query: 46   IVTSDTPTALSLELELNYLLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITH 105
            ++  D P    L   L +      ++V  FP  +  PYD  SPH  +++QR+ TL++++ 
Sbjct: 52   VICRDGPRMQQLARSLEFFAPD--LEVLQFPAWDCQPYDRVSPHAGILAQRVTTLAKLSR 109

Query: 106  AEHS----VVIVPVTTLMMRLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQV 161
               S    +V+  V   + R+P +  +++    +  G+   +  +   L   GY     V
Sbjct: 110  LTGSDKPLIVLTTVNAAVQRVPVREIIAAQALSVAPGNVVPMDSIVAWLEHNGYSRASTV 169

Query: 162  YEHGEFAIRGSILDIFPTGVNMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKE 221
             E GE+A+RG ILD+FP G++ P+R + F D++E+IR FD ETQR+   +  + L+P  E
Sbjct: 170  REAGEYAVRGGILDLFPAGLDQPVRFDFFGDQLESIRTFDAETQRTLHTMRGLDLVPVSE 229

Query: 222  FPTDSSAIEGFRQRYRRRFEVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYL 281
            F   +  I  FR  Y   F     + + +Y  VS      G+E++LPLF + + TLFDYL
Sbjct: 230  FQLVTETIRRFRMGYVAAFGAPHPD-DQLYAAVSEGRRHPGMEHWLPLFQERMDTLFDYL 288

Query: 282  PKNTQLVTLGDIEKSARAHLQEVEIRYEDRRVDPLRP-------LLAPKELYLLIEELFA 334
             K T +      E +AR   +++   Y+ RR    +P        L P  LYL   E  A
Sbjct: 289  -KGTPVAIEPQSEDAARERFKQIADYYDARREAMEQPGSGAIYKPLPPDRLYLTDSEWTA 347

Query: 335  AFK--PLPRYQFVAPNPDTNGV---AAQIDARALPE-VSANHKLKQPLIALQDYAEQAPR 388
              +   L R    A   DT+ V    A+      PE   +N  + + L+A   YA QA R
Sbjct: 348  RLEGVALARLTPFALPDDTSDVIDAGARAGRNFAPERADSNVNVFETLVA-HVYALQAAR 406

Query: 389  --MLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDARLGLIVSPLSRGCLLGLGA 446
              ++ +  SEG R+ +  +L   +L      +    +Q+  R   +++ +     L  G 
Sbjct: 407  KKVVIALWSEGSRDRMASMLKDHKLVALTSVNSWRTVQATPRNETMLAVVG----LESGF 462

Query: 447  QT-AVSIICETELFGQRISQQRRREKQRQISNDTLIKNLAELKVGQPIVHLEHGVALYQG 505
            +T A ++I E ++ G R+ +QR+  K+     D  I  +  L  G  +VH+EHG+  + G
Sbjct: 463  ETDAFAVITEQDVLGDRLVRQRKASKKL----DNFISEVTSLSTGDIVVHVEHGIGRFVG 518

Query: 506  LVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGET-HLNKLGNDTWAKAK 564
            L TL+ GG   + ++L Y+   KL++PV N+ L+SRY  G+DG +  L+KLG   W   K
Sbjct: 519  LQTLEVGGAPHDCVELHYANDTKLFLPVENIELLSRY--GSDGTSVELDKLGGSGWQARK 576

Query: 565  NKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLA 624
             K   +IR +A EL+ V A R  R      I  + Y +F   FP++ET DQ +AI+A L 
Sbjct: 577  AKLKNRIRQIAGELIKVAAERHLREAPKLPIQPQLYDEFCARFPYDETEDQLAAINAALG 636

Query: 625  DMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFA 684
            D++  T MDRLVCGDVGFGKTEVA+RAAF    DGKQV V+VPTTLLA+QH + F +RF 
Sbjct: 637  DLEKGTPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFR 696

Query: 685  DWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRF 744
             +PV +   SR  +AKE +QV K + +G  DIV+GTH LL    KF++LGL+I+DEE  F
Sbjct: 697  GFPVNVGQASRLVSAKELSQVKKGIADGTTDIVVGTHALLGKSIKFKDLGLVIVDEEQHF 756

Query: 745  GVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESD 804
            GV  KEK+K LR+ V +LTL+ATPIPRTL +AM+G+RDLSIIA+PP  RLAV+TFV   D
Sbjct: 757  GVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLAVRTFVAPHD 816

Query: 805  PATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLERVM 864
            P  +REA+LRE  RGGQ +Y+   ++ + +    +   +PE +V VAHGQM    +E +M
Sbjct: 817  PLMIREALLRERYRGGQAFYVVPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPAVIEDIM 876

Query: 865  SDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAYAYL 924
            S FY  +F++L+ TTI+E+G+D+P+ANT+I+ RAD FGLAQL+QLRGRVGRS  +AYA  
Sbjct: 877  SAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALF 936

Query: 925  MTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSL 984
              P    +T  A +RL+ + +LE LGAGF LA+ DL+IRGAG LLG+EQSGHI ++GF L
Sbjct: 937  TLPQ-HNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFEL 995

Query: 985  YMEMLESAVKALKQG--KEPSLAQMLNQQCEMELRIPALLPEDYVGDVNIRLSLYKRIAS 1042
            Y +MLE A+  LK G   EP   +   Q   + + +P L+P+D+V D+++RLSLY+R+A 
Sbjct: 996  YQQMLEEAITNLKAGIVDEPVADRWSPQ---ITIGMPVLIPDDFVADLSVRLSLYRRLAD 1052

Query: 1043 CDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIEVHAKGGSIEFSQD 1102
             D++E +D    EL DRFG LPD  + L ++   K    R    K++   KG  I F  +
Sbjct: 1053 LDTDEEIDNFAAELRDRFGPLPDEVRYLFKIAAIKAYCRRANVEKVDAGPKGVVITFRDN 1112

Query: 1103 HSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLLLEQLS 1153
                P  ++  ++      ++    K+ F    ET ++RL     +L+QL+
Sbjct: 1113 AFAQPDKLVFFIKRHGDAAKVRPDMKVVFFQVWETPEERLMGTTDILKQLA 1163