Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1156 a.a., transcription-repair coupling factor from Lysobacter sp. OAE881

 Score = 1082 bits (2798), Expect = 0.0
 Identities = 579/1150 (50%), Positives = 773/1150 (67%), Gaps = 10/1150 (0%)

Query: 8    TPPVVKNGTQMQTLSCIAGVGQ-AVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLA 66
            TPP+ K G Q       A     A  +A+    H    L+V  D   A  LE +L+ LL 
Sbjct: 8    TPPLPKTGQQRAWWRAPASPSALAFHVAAAASAHSAPLLVVARDNQGAHQLESDLHTLLG 67

Query: 67   --KTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPP 124
              +T + V  FPD ETLPYD FSPH D++SQRL  L ++   +  +VIVPV TL+ RL P
Sbjct: 68   AQQTELPVIGFPDWETLPYDVFSPHPDIVSQRLAALHRLPTLKRGIVIVPVQTLLQRLAP 127

Query: 125  KSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMP 184
              ++    F ++ G +  L   +++L   GY  V QV + G+FA+RG +LD++P G + P
Sbjct: 128  LKHVVGGSFDVRTGQRLDLDAEKRRLESAGYRHVPQVLDPGDFAVRGGLLDVYPMGADQP 187

Query: 185  LRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIV 244
             R+EL DDE+ETIR FDPE+QRS   ++AV LLP +E P   +A++      R RF++  
Sbjct: 188  FRVELLDDEIETIRAFDPESQRSLEKIDAVHLLPGREVPLSDAALKRALDALRDRFDLDT 247

Query: 245  KEPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEV 304
            +   ++YQ +   L P GIE YLPLFFD  STLFDYL   T  V      ++A       
Sbjct: 248  RR-SALYQDLKAGLAPPGIEYYLPLFFDTTSTLFDYLDAETLPVIADGAMEAADQFWTHT 306

Query: 305  EIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALP 364
              RYE RR D  RPLL P  LYL  + L        R +           A+ +  +  P
Sbjct: 307  GERYEQRRHDLERPLLPPDALYLPPDALRERLNAGARVEVCGEGHAQRERASALGDQPAP 366

Query: 365  EVSANHKLKQPLIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFI 423
             +    +   P  AL  +    P R+L +A+S GRREALLE+L    LKP V + F  F+
Sbjct: 367  SLPVAARDHAPADALTSFLSSYPGRVLVAADSPGRREALLEILQAGALKPEVVADFPAFL 426

Query: 424  QSDA-RLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIK 482
             +DA R  + V+PL  G  +    + A  ++ E +LF +R SQ RRR +  +   + +IK
Sbjct: 427  ANDASRFSIAVAPLDDGFAI---TEPAFVVLTERQLFPERASQPRRRRRVGR-EPEAIIK 482

Query: 483  NLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRY 542
            +L EL  G PIVH +HGV  Y+GLVTL+ GG+ AEYL++EY+ GD+LYVPV+ LHLI+RY
Sbjct: 483  DLGELTEGAPIVHEDHGVGRYRGLVTLEAGGMPAEYLEIEYAKGDRLYVPVAQLHLINRY 542

Query: 543  SVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQ 602
            S  ++    L+ LG + W KAK KA EK+RDVAAELL++ A+RQAR G + +++   Y  
Sbjct: 543  SGASEETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLAIDVDRAVYEP 602

Query: 603  FAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV 662
            FA  FPFEET DQ +AI AV+ D+ S   MDR+VCGDVGFGKTEVA+RAAF     GKQV
Sbjct: 603  FAAAFPFEETPDQHAAIEAVIRDLASSQPMDRVVCGDVGFGKTEVAVRAAFTTAMGGKQV 662

Query: 663  VVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHK 722
             VLVPTTLLA+QHY NF+DRFADWP+ +EV+SRF+T KE    L ++ +G +D+++GTH+
Sbjct: 663  AVLVPTTLLAEQHYRNFRDRFADWPIRVEVLSRFKTKKEIEAELAKVADGTIDVIVGTHR 722

Query: 723  LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRD 782
            LLQ + +F++LG +I+DEE RFGVRQKE +KALRANV +LTLTATPIPRTLNMAM+G+RD
Sbjct: 723  LLQKDVRFKDLGAVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD 782

Query: 783  LSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTL 842
            LSIIATPPA RLAV+TFV   D   +REA  RE+ RGGQVY+LHN+VE+I +  +++  L
Sbjct: 783  LSIIATPPAHRLAVQTFVVPWDDMQLREAFQRELSRGGQVYFLHNDVESIGRMQRELQEL 842

Query: 843  LPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFG 902
            +PEAR+ VAHGQM ER+LERVM DF+ QR+NVL+ TTIIE+GID+P+ANTIII RAD FG
Sbjct: 843  VPEARIGVAHGQMPERELERVMLDFHKQRYNVLLSTTIIESGIDIPNANTIIINRADRFG 902

Query: 903  LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEI 962
            LAQLHQLRGRVGRSHH+AYAYL+ P  K +T DARKRL+AI A+++LGAGF LAT DLEI
Sbjct: 903  LAQLHQLRGRVGRSHHRAYAYLVVPDRKAITEDARKRLDAIAAMDELGAGFTLATHDLEI 962

Query: 963  RGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALL 1022
            RGAGELLG+EQSG ++++GFSLY E+LE AV++++QGK P +  +  +  E+ELRIPAL+
Sbjct: 963  RGAGELLGEEQSGQMAEVGFSLYTELLERAVRSIRQGKLPDVDMVEARGAEVELRIPALI 1022

Query: 1023 PEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATR 1082
            P+DY+ DV+ RL+LYKRI+     + L EL+VE+IDRFGLLPD  K +  +   K +AT 
Sbjct: 1023 PDDYLPDVHTRLTLYKRISGARDTDELRELQVEMIDRFGLLPDPAKYMFAVAELKLRATE 1082

Query: 1083 LGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRL 1142
            LG  K+++   GG + F +  ++DP  II L+Q QP++Y+M+GP+KL+  L    A  R+
Sbjct: 1083 LGIRKLDLGETGGRVHFVEKPNVDPMAIIRLIQGQPKLYKMEGPDKLRMTLDLPDASSRV 1142

Query: 1143 ALVKLLLEQL 1152
               K +L  L
Sbjct: 1143 LAAKGILTAL 1152