Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1148 a.a., transcription-repair coupling factor from Klebsiella michiganensis M5al

 Score = 1258 bits (3254), Expect = 0.0
 Identities = 649/1146 (56%), Positives = 844/1146 (73%), Gaps = 13/1146 (1%)

Query: 12   VKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIK 71
            VK G Q Q L  + G   A  +A +  +H G  +++  D   AL L  E+      T   
Sbjct: 11   VKAGDQRQ-LGELTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIRQF---TDSM 66

Query: 72   VRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYLSSN 131
            V    D ETLPYDSFSPHQD+IS RL TL Q+   E  V+I+PV+TLM R+ P ++L  +
Sbjct: 67   VAGLADWETLPYDSFSPHQDIISSRLATLYQLPTMERGVLIIPVSTLMQRVCPHNFLHGH 126

Query: 132  VFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFD 191
              V+KKG +     +R QL   GY  V+QV EHGE+A RG++LD+FP G   P R++ FD
Sbjct: 127  ALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFD 186

Query: 192  DEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVY 251
            DE++++R FD ++QR+   V ++ LLPA EFPTD +AIE FR ++R RFEV  ++ E +Y
Sbjct: 187  DEIDSLRLFDVDSQRTLEEVASINLLPAHEFPTDQAAIELFRSQWRDRFEV-KRDAEHIY 245

Query: 252  QLVSRNLMPAGIENYLPLFFDE-VSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYED 310
            Q VS+  +PAGIE + PLFF+E +  LF Y P  T +V  GD+E SA     E   R+E+
Sbjct: 246  QQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPAKTLIVNTGDLEASAERFQNETRARFEN 305

Query: 311  RRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSANH 370
            R VDP+RPLL  ++L+L  +ELF+  K  PR Q              +  + L E++   
Sbjct: 306  RGVDPMRPLLPTEQLWLRSDELFSELKKWPRVQLKTERLAEKAANTNLGYQKLHELAIQA 365

Query: 371  KLKQPLIALQDYAEQ-APRMLFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDARL 429
            + K PL  L+ + E  +  ++FS ESEGRREAL E+L +I++ P      +E   +   L
Sbjct: 366  QNKAPLDNLRRFLESFSGPVIFSVESEGRREALGEMLARIKIAPKHILRLEEATANGRYL 425

Query: 430  GLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIKNLAELKV 489
              ++     G +    +Q  +++ICE++L G+R+++ RR++ +R I+ DTLI+NLAEL +
Sbjct: 426  --MIGAAEHGFI---DSQRNLALICESDLLGERVAR-RRQDSRRTINPDTLIRNLAELHI 479

Query: 490  GQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGE 549
            GQP+VHLEHGV  Y G+ TL+ GGI  EYL L Y+   KLYVPVS+LHLISRY+ GA+  
Sbjct: 480  GQPVVHLEHGVGRYAGMTTLEAGGINGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539

Query: 550  THLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPF 609
              L+KLG D WA+A+ KA EK+RDVAAELLD+YA+R A+ G + + + E+Y  F  GFPF
Sbjct: 540  APLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDGFPF 599

Query: 610  EETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTT 669
            E T DQ  AI+AVL+DM  P AMDRLVCGDVGFGKTEVAMRAAF+AV + KQV VLVPTT
Sbjct: 600  ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT 659

Query: 670  LLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAK 729
            LLAQQH++NF+DRFA+WPV IE++SRFR+AKEQ Q+L+Q+ EGK+DI+IGTHKLLQ + K
Sbjct: 660  LLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQPDVK 719

Query: 730  FENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 789
              +LGLLI+DEEHRFGVR KE+IKA+RA+VDILTLTATPIPRTLNMAMSGMRDLSIIATP
Sbjct: 720  LRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779

Query: 790  PAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVV 849
            PA+RLAVKTFVRE D   VREAILRE+LRGGQVYYL+N+VE I+K A+ ++ L+PEAR+ 
Sbjct: 780  PARRLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839

Query: 850  VAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQL 909
            + HGQMRER+LERVM+DF+HQRFNVLVCTTIIETGID+P+ANTIIIERAD FGLAQLHQL
Sbjct: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899

Query: 910  RGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELL 969
            RGRVGRSHHQAYA+L+TPHPK MTTDA+KRLEAI +LEDLGAGF LAT DLEIRGAGELL
Sbjct: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959

Query: 970  GDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGD 1029
            G++QSG +  IGFSLYME+LE+AV ALK G+EPSL  + +QQ E+ELR+P+LLP+D++ D
Sbjct: 960  GEDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019

Query: 1030 VNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIE 1089
            VN RLS YKR+AS  +E  L+E+KVELIDRFGLLPD  +NL+++   + QA +LG  K+E
Sbjct: 1020 VNTRLSFYKRVASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLE 1079

Query: 1090 VHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLLL 1149
             + KGG+IEF++ ++++P ++I LLQ QPQ YR+DGP +LKF+      K R+  V+  +
Sbjct: 1080 SNEKGGTIEFNEKNNVNPVWLISLLQKQPQHYRLDGPTRLKFMQDLAERKTRMEWVRQFM 1139

Query: 1150 EQLSQH 1155
             QL ++
Sbjct: 1140 RQLEEN 1145