Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1157 a.a., transcription-repair coupling factor (mfd) from Sphingomonas koreensis DSMZ 15582

 Score =  718 bits (1854), Expect = 0.0
 Identities = 438/1125 (38%), Positives = 636/1125 (56%), Gaps = 49/1125 (4%)

Query: 1    MTHISALTPPVVKNGTQMQTLS-CIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLEL 59
            +  I + T P+  +G     L   +A + +A T  ++      + +   + T    + EL
Sbjct: 4    LNQILSATTPLTLSGVPAGFLPWLLADLARASTTGAVYIAPDESAMRAVASTAAFFAPEL 63

Query: 60   ELNYLLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITH--AEHSVVIVPVTT 117
            E+             FP  + LPYD  SP   ++++R+  L+ +    ++  +++  V  
Sbjct: 64   EIVQ-----------FPAWDCLPYDRASPTLRVMAERMAALAALQGKTSKPRLILTTVNA 112

Query: 118  LMMRLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIF 177
               R      +      L  G++  L  +   L+  GY   + V++ GEFA+RG ++D+F
Sbjct: 113  ATQRTLTPFRVRQMTARLAPGERISLDKLAALLSANGYVRTDTVHDSGEFAVRGGLVDLF 172

Query: 178  PTGVNMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYR 237
            P+G    LR++ F DE+E++R FDP  QR++  V+   LLPA E   D   I+ FR RYR
Sbjct: 173  PSGSEQGLRLDFFGDEIESVRTFDPADQRTTGRVDGFTLLPASEALLDEDTIKRFRTRYR 232

Query: 238  RRFEVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVT-LGDIEKS 296
             +F       + +YQ +S     AG+E++LPLF + + TLF++LP +  +V   GD   +
Sbjct: 233  EKFGATATG-DPLYQAISDGRRLAGMEHWLPLFEERLETLFEHLPADAVIVRDAGDAGAA 291

Query: 297  -----ARAHLQEVEIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRY---QFVAPN 348
                 A A  Q   +R +       RPL    +LYLL  E     K    +    F  P 
Sbjct: 292  ENRFEAIADYQANRVRAQSTDAGSYRPL-GTDQLYLLPAEWDKRLKEAKAHLATPFHEPE 350

Query: 349  PDTNGVAAQIDARAL-PEVSANHKLKQPLIA-LQDYAEQAPRMLFSAESEGRREALLELL 406
              T    A    R   PE +A   + + +   L    +   + + ++ S G RE L  LL
Sbjct: 351  SATVLDFAVDGPRDFAPERAAGTNIYEAVAEHLAKLRKAGKKPILASYSIGSRERLKGLL 410

Query: 407  GKIQLKPSVFSH-FDEFI------QSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELF 459
                L  +VF+  + E +      +    + LIV PL  G          V+++ E ++ 
Sbjct: 411  ADHGLPNAVFAESWQEALGVAAGGRDSGNVALIVLPLDHGF-----TSPEVALLTEQDML 465

Query: 460  GQRISQQRRREKQRQISNDTLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYL 519
            G R+ ++ +R+K    S D  +  LA L  G  +VHLEHG+  Y+GL  +       + +
Sbjct: 466  GDRLVRRNKRKK----STDAFLAELATLSPGDLVVHLEHGIGRYEGLTQIPVQKAPHDCV 521

Query: 520  QLEYSGGDKLYVPVSNLHLISRYSVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELL 579
             L Y+GGDKLYVPV NL ++SRY    +G   L++LG + W + K++  E+IR++A EL+
Sbjct: 522  ALTYAGGDKLYVPVENLEVLSRYGSSEEGAA-LDRLGGEAWQRRKSRMKERIREIAGELI 580

Query: 580  DVYARRQARPGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGD 639
               A R  RPGE  E +   Y  F   FPF ET DQ+ AI  VL D+ +   MDRLV GD
Sbjct: 581  ATAAARAVRPGEVLEPDPGGYPAFVDRFPFTETDDQDRAIGDVLEDLAAGRPMDRLVVGD 640

Query: 640  VGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTA 699
            VGFGKTEVA+RAAFVA   G+QV V+ PTTLLA+QH+ NF  RF  +P+ I  +SR   A
Sbjct: 641  VGFGKTEVALRAAFVAAMAGQQVAVVCPTTLLARQHFTNFVQRFEGFPIRIGRLSRLVPA 700

Query: 700  KEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANV 759
             E     + LE G++DIV+GTH +L    +F+ LGL+I+DEE RFGV  KE++K L+A+V
Sbjct: 701  AEAKATREGLESGQIDIVVGTHAVLAKGIEFKRLGLVIVDEEQRFGVTHKERLKGLKADV 760

Query: 760  DILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRG 819
             +LTLTATPIPRTL MAMSG+R+LS+I TPP  RLAV+T+V   DP  +REA+LRE  RG
Sbjct: 761  HVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRG 820

Query: 820  GQVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTT 879
            GQ + +   +  +    + +   +PE R VVAHGQM   ++E  MS FY +++ VLV TT
Sbjct: 821  GQSFLVTPRIADLPDIEKFLREEVPEVRYVVAHGQMAAGEVEERMSAFYDKKYEVLVSTT 880

Query: 880  IIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKR 939
            IIE+G+D+PSANT+II RAD FGLAQL+QLRGRVGR+  +AYAY+ T   + MT  A KR
Sbjct: 881  IIESGLDIPSANTMIINRADRFGLAQLYQLRGRVGRAKTRAYAYMTTAPQRLMTEAAEKR 940

Query: 940  LEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQG 999
            L+ +  LE LGAGF LA+ DL+IRGAG LLGDEQSGHI ++G+ LY  MLE A+   K G
Sbjct: 941  LKVLSDLESLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQSMLEEAIMDAKAG 1000

Query: 1000 KEPSLAQMLNQQCEMELRI--PALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELI 1057
                LA    +    ++ +  P L+PE +V D+++R+ LY+R+   + +  +DE   E+I
Sbjct: 1001 ---GLADARPRDLSPQITVDAPILIPEGFVPDLDLRMGLYRRLNEVEDKRGIDEFAAEMI 1057

Query: 1058 DRFGLLPDATKNLMEMTLYKHQATRLGATKIEVHAKGGSIEFSQD 1102
            DRFG LP+ T+NL+ +   K  A R    KI+V  KG  + F +D
Sbjct: 1058 DRFGKLPEETENLLLLIEAKLNAKRACIAKIDVGPKGALVSFHED 1102