Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1145 a.a., transcription-repair coupling factor from Herbaspirillum seropedicae SmR1

 Score = 1046 bits (2706), Expect = 0.0
 Identities = 559/1124 (49%), Positives = 746/1124 (66%), Gaps = 16/1124 (1%)

Query: 34   ASLIRQHQGTTL-IVTSDTPTALSLELELNYLLAKTAIKVR--LFPDRETLPYDSFSPHQ 90
            A+L  + +G  L +V +    A  L  E+ +       ++R  L PD ETLPYD+FSPHQ
Sbjct: 33   AALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPSEGERLRCHLLPDWETLPYDAFSPHQ 92

Query: 91   DLISQRLETLSQITHAEHSVVIVPVTTLMMRLPPKSYLSSNVFVLKKGDKYQLHDVRQQL 150
            DL+S+RL TL ++   +  ++IVP TT ++R+ P  +L++  F  K+G+K     ++ QL
Sbjct: 93   DLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQL 152

Query: 151  TDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLRIELFDDEVETIRHFDPETQRSSTP 210
            T  GY  V QV   GE+++RG ++DIFP G  +P R++LF D +ETIR FD +TQRS  P
Sbjct: 153  TLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLDLFGDTIETIRTFDADTQRSLYP 212

Query: 211  VNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKEPESVYQLVSRNLMPAGIENYLPLF 270
            V  VRLLP +EFP D ++   FR R+R  FE       ++Y+ +   +  AGIE YLPLF
Sbjct: 213  VPEVRLLPGREFPMDEASRLAFRNRWREVFEGDPSR-SAIYKDIGNGIASAGIEYYLPLF 271

Query: 271  FDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQEVEIRYEDRRVDPLRPLLAPKELYLLIE 330
            F+E +TLF YLP N    T+GDIE++ +    +   R+     D  RP+L P+ +YL  E
Sbjct: 272  FEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWNFLHADRERPVLEPQAIYLDDE 331

Query: 331  ELFAAFKPLPRYQFVAPNPDTNGVAAQIDARALPEVSANHKLKQPLIALQDYA-EQAPRM 389
            + F   KP  R+        T+   + I A  LP ++ N +   PL+ L+ +  + A R+
Sbjct: 332  DFFTLLKPHARWVL-----KTDDAPSAISA-PLPNIAVNRRADDPLVNLRSFLLKGAERV 385

Query: 390  LFSAESEGRREALLELLGKIQLKPSVFSHFDEFIQSDARLGLIVSPLSRGCLLGLGAQTA 449
            L  AES GRRE L +   +  L P +   ++ F+ SD  L L V+PL  G +   G    
Sbjct: 386  LICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLASDEPLMLGVAPLHAGFVTAAG---- 441

Query: 450  VSIICETELFGQRISQQRRREKQRQISNDTLIKNLAELKVGQPIVHLEHGVALYQGLVTL 509
            ++++ ETEL+     +   R++Q     + ++++L+ELK+G P+VH  HG+  Y GLV++
Sbjct: 442  LALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSSHGIGRYMGLVSM 501

Query: 510  DTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRYSVGADGETHLNKLGNDTWAKAKNKAIE 569
            D G    E+L LEY+   KLYVPVS LH+ISRYS  +  +  L+ LG+  W KAK KA +
Sbjct: 502  DLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGSGQWEKAKRKAAQ 561

Query: 570  KIRDVAAELLDVYARRQARPGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSP 629
            ++RD AAELL++YARR  R G + + +  +Y  FA  F FEET DQ +AI+AV+ DM   
Sbjct: 562  QVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINAVIKDMTGG 621

Query: 630  TAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVV 689
              MDRL+CGDVGFGKTEVA+RAAFVAV  GKQV +L PTTLLA+QH   F DRFA+WPV 
Sbjct: 622  KPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAATFADRFANWPVK 681

Query: 690  IEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQK 749
            I  +SRFRT KE TQ +K L +G +DIVIGTHKLL  E KF  LGL+IIDEEHRFGVRQK
Sbjct: 682  IAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVIIDEEHRFGVRQK 741

Query: 750  EKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVR 809
            E +K+LRA VD+LTLTATPIPRTL MA+ G+RD S+IAT P KRLA+KTFVR    +T+R
Sbjct: 742  EALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRAEQESTIR 801

Query: 810  EAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLERVMSDFYH 869
            EA LRE+ RGGQVY+LHN VETI      +  LLPEAR+ VAHGQM ERDLE+VM DF  
Sbjct: 802  EACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARIGVAHGQMHERDLEKVMRDFVA 861

Query: 870  QRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHP 929
            QRFN+L+CTTIIETGIDVP+ANTII+ RAD FGLAQLHQLRGRVGRSHHQAYAYL+    
Sbjct: 862  QRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVQDV 921

Query: 930  KRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEML 989
            + ++  A++RLEAI  +E+LG+GF LA  DLEIRGAGE+LGD QSG I +IGF +Y +ML
Sbjct: 922  QGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEIHEIGFQMYSDML 981

Query: 990  ESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGDVNIRLSLYKRIASCDSEEAL 1049
              AV+ALK G+EP LA  L+   E+ L  PALLP D+ GDV+ RLSLYKR+A+C+  +A+
Sbjct: 982  NEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLYKRLANCEKSDAI 1041

Query: 1050 DELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIEVHAKGGSIEFSQDHSIDPGF 1109
            D L+ ELIDRFG LPDA K L+E    +  A  LG  KI+ H++   ++F  +  ID   
Sbjct: 1042 DALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALLQFVPNPPIDAMR 1101

Query: 1110 IIGLLQSQPQIYRMDGPNKLKFILSAETAKDRLALVKLLLEQLS 1153
            II L+Q   Q+ +++GP+KL+   S      R+  VK  ++ L+
Sbjct: 1102 IIELVQKNRQV-KLNGPDKLRITASMPDLNARVQQVKATMKALT 1144