Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  709 bits (1830), Expect = 0.0
 Identities = 415/1074 (38%), Positives = 618/1074 (57%), Gaps = 32/1074 (2%)

Query: 65   LAKTA--IKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHS--VVIVPVTTLMM 120
            LA TA  I V  FP  + LPYD  SP+ ++ + R+ TL+ + H      V++  ++ +  
Sbjct: 52   LAVTAPQIPVLRFPGWDCLPYDRSSPNPEISATRMATLAALAHGVPGPFVLLTTLSAVTQ 111

Query: 121  RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180
            R+P ++ L+   F  + G +     +RQ LT  G+     V E G++AIRG I+DIFP G
Sbjct: 112  RVPARATLAEASFSAQVGGRIDEAALRQFLTRMGFVQAPTVTEPGDYAIRGGIIDIFPPG 171

Query: 181  VNMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRF 240
             + P+R++LF D ++  R FD  TQR++  ++A+ L P  E   D +AI  FRQ YR  F
Sbjct: 172  QSGPVRLDLFGDVLDGARRFDAATQRTTEKLDAIELAPVSEIILDPAAITRFRQSYRIEF 231

Query: 241  EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAH 300
                 + + +Y+ VS     AG+E++LP F D + TL DY+P+   L+     E    + 
Sbjct: 232  GAAGTD-DPLYEAVSAGRKHAGMEHWLPFFHDRLETLLDYVPE-ASLILDDQFEAMHLSR 289

Query: 301  LQEVEIRYEDRR--------VDPLRPLLAPKELYLLIEELFAAFKPLPRYQFV----APN 348
             + ++ +YE RR        +  +     P+ LY+   +  A        Q      A  
Sbjct: 290  WEGIKDQYETRRHALAQKGQMGTVYKPAPPETLYIPPADETALLATKRTLQLSVLPSASG 349

Query: 349  PDTNGVAAQIDARALPEVSANHK-LKQPLIALQDYAEQAPRMLFSAESEGRREALLELLG 407
            P       +I     PE  +    L + L        +  +++ ++ SEG RE L  LL 
Sbjct: 350  PGVTDAGGRIGRNFAPERQSQATGLFEALATHITEKRKTSQVVIASWSEGARERLRGLLE 409

Query: 408  KIQLKP-SVFSHFDEFIQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQ 466
               L   +  +   +  +    + L+V  L  G        T +++I E ++ G R+ + 
Sbjct: 410  DQDLSGLTEIARLSDIPEGTGGVHLLVWALDEGFEGPDHRSTRLTVISEQDVLGDRLIRT 469

Query: 467  RRREKQRQISNDTLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGG 526
             +R+++ +      ++    L  G  +VH++HGV  ++GL T+   G   E L LEY+GG
Sbjct: 470  TKRKRRAE----NFLQEATSLSAGDLVVHVDHGVGAFKGLETVTAMGAPHECLLLEYAGG 525

Query: 527  DKLYVPVSNLHLISRYS--VGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYAR 584
            D+LY+PV N+ L+SR+   +G      L+KLG   W   K K  E+IR++A +L+ + A 
Sbjct: 526  DRLYLPVENIELLSRFGQEIGM-----LDKLGGGAWQAKKAKLKERIREMADKLIRIAAE 580

Query: 585  RQARPGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGK 644
            R  R     E   + +  F+  FP+ ET DQ SAI  V+ D+ + T MDRL+CGDVGFGK
Sbjct: 581  RALRRAPMLEPPPDMWEAFSARFPYTETDDQLSAIEDVVHDLAAGTPMDRLICGDVGFGK 640

Query: 645  TEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQ 704
            TEVAMRAAF+A   G QV V+ PTTLLA+QHY++F DRF  +P+ +  +SRF  AK    
Sbjct: 641  TEVAMRAAFIAALSGVQVAVIAPTTLLARQHYKSFADRFRGFPLEVRPLSRFVPAKAAAD 700

Query: 705  VLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTL 764
              K L  G VDIV+GTH LL    +F NLGLLIIDEE RFGV  KE++K LR++V +LTL
Sbjct: 701  TRKGLAAGSVDIVVGTHALLAKGVRFHNLGLLIIDEEQRFGVGHKERLKELRSDVHVLTL 760

Query: 765  TATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYY 824
            TATPIPRTL +++SG+RDLSII TPP  RL+++T+V E DP T+REA+LRE  RGGQ ++
Sbjct: 761  TATPIPRTLQLSLSGVRDLSIIGTPPVDRLSIRTYVSEFDPVTLREALLREHYRGGQSFF 820

Query: 825  LHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETG 884
            +   ++ I +    +   +PE   VVAHGQM   +L+  M+ FY  +++VL+ TTI+E+G
Sbjct: 821  VVPRIKDIPEIEAFLRDQVPEVSFVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESG 880

Query: 885  IDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAID 944
            +D+P+ANT+II RAD FGL+QL+Q+RGRVGR+  +AYAYL T    ++T  A KRL  + 
Sbjct: 881  LDIPTANTMIIHRADMFGLSQLYQIRGRVGRAKTRAYAYLTTKPRMKLTPAAEKRLRVLG 940

Query: 945  ALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSL 1004
            +L+ LGAGF LA+QDL+IRGAG LLG+ QSG   ++GF LY  MLE A+  +K G    L
Sbjct: 941  SLDSLGAGFTLASQDLDIRGAGNLLGEAQSGQFREVGFELYQSMLEEAIGKIKSGSLEGL 1000

Query: 1005 AQMLNQQC-EMELRIPALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLL 1063
                 Q   ++ L +P L+PE YV D+++RL LY+R++   ++  L+    ELIDRFG L
Sbjct: 1001 TDDDGQWAPQINLGVPVLIPEAYVPDLDVRLGLYRRLSQLTTKVELEGFAAELIDRFGKL 1060

Query: 1064 PDATKNLMEMTLYKHQATRLGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQ 1117
            P     L+ +   K    + G  K++   KG +++F  D   +P  ++  +  Q
Sbjct: 1061 PKEVNTLLLIVRIKAMCKKAGIAKLDGGPKGATVQFHNDKFANPAGLVKFINDQ 1114