Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1143 a.a., transcription-repair coupling factor from Ralstonia sp. UNC404CL21Col

 Score = 1070 bits (2767), Expect = 0.0
 Identities = 581/1137 (51%), Positives = 758/1137 (66%), Gaps = 24/1137 (2%)

Query: 1    MTHISALTPPVVKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTT---LIVTSDTPTALSL 57
            M+  S    P VK G++    S + G   A+ LA  + QH+       +V ++   A  L
Sbjct: 1    MSDFSLSALPAVKPGSRF-VFSGLQGAADALLLARYLEQHRAAVPMLAVVCANAVDAQRL 59

Query: 58   ELELNYLLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTT 117
              EL +   +   +V+L PD ETLPYD+FSPHQDLIS+RL TL  + +    +++VP +T
Sbjct: 60   AEELRWFAPQA--RVKLLPDWETLPYDNFSPHQDLISERLATLHDLQNGACDILLVPAST 117

Query: 118  LMMRLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIF 177
             + R+ P S+L++  F  KKG+K     ++ Q T  GY  V  V   GE+++RG ++D+F
Sbjct: 118  ALQRVAPPSFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLF 177

Query: 178  PTGVNMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYR 237
            P G  +P R++LF DE+ETIR FDP+TQRS  PVN VRLLP +EFP D ++   FR R+R
Sbjct: 178  PMGSPLPYRLDLFGDEIETIRSFDPDTQRSLYPVNEVRLLPGREFPMDEASRTAFRGRWR 237

Query: 238  RRFEVIVKEP--ESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEK 295
              FE    +P    +Y+ +   +  AGIE YLPLFF+E +TLFDYLP  T L  +GDIE 
Sbjct: 238  EVFE---GDPTRSPIYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPGATHLAFVGDIEG 294

Query: 296  SARAHLQEVEIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVA 355
            + R    +   RY   R D  RPLL P  LYL  E  F A KP  R    A   D     
Sbjct: 295  AVRRFWADTTQRYNFMRHDRERPLLQPSALYLDEEAFFVAAKPHARLVLRAEPGDAPL-- 352

Query: 356  AQIDARALPEVSANHKLKQPLIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPS 414
                +  LP V+ N + + PL+ L+ +  ++  R++  AES GRRE L ++L    L P 
Sbjct: 353  ----SLPLPNVAVNRRAEDPLVNLESFLMRSNCRVMICAESAGRRETLAQMLAASGLHPE 408

Query: 415  VFSHFDEFIQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQ 474
              + F + +  DA+  L V+PL +G +LG      +++I ETEL+ Q + +  RR++++ 
Sbjct: 409  SVADFADLMSGDAKFVLGVAPLYQGFILG---DERIALITETELYAQTVRRAGRRKQEQA 465

Query: 475  ISNDTLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVS 534
             + D+++++LAELK+G P+VH EHG+  YQGLV++D G    E+L L+Y  G KLYVPV 
Sbjct: 466  TAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVH 525

Query: 535  NLHLISRYSVGADGETH-LNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESC 593
             LH+ISRYS GAD ET  L+ LG+  W KAK KA ++IRD AAELL++YARR  R G + 
Sbjct: 526  QLHVISRYS-GADPETAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGFAF 584

Query: 594  EINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAF 653
             +  E+YA FA+ F FEET DQ +AI AV+ DM S   MDRLVCGDVGFGKTEVA+RAAF
Sbjct: 585  PLTPEDYATFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAF 644

Query: 654  VAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGK 713
            VAV  GKQV +L PTTLLA+QHY+   DRFADWPV I  +SRF+  KE    ++ +  G 
Sbjct: 645  VAVMGGKQVAILAPTTLLAEQHYQTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGT 704

Query: 714  VDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTL 773
            +DIVIGTHKLL  + KF+ LGL+IIDEEHRFGVRQKE +K LRA VD+LTLTATPIPRTL
Sbjct: 705  IDIVIGTHKLLSPDVKFDRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTL 764

Query: 774  NMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIE 833
             MA+ G+RD S+IAT P KRLA+KTF+R  +   +REAILRE+ RGGQVY+LHN VETIE
Sbjct: 765  GMALEGLRDFSVIATAPQKRLAIKTFLRREEDGVLREAILRELKRGGQVYFLHNEVETIE 824

Query: 834  KCAQDISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTI 893
                 +  L+PEARVVVAHGQM ER+LERVM DF  QR N+L+CTTIIETGIDVP+ANTI
Sbjct: 825  NKRAKLEELIPEARVVVAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTI 884

Query: 894  IIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGF 953
            +I RAD FGLAQLHQLRGRVGRSHHQAYAYL+      +T  A++RLEAI  +E+LGAGF
Sbjct: 885  LIHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGAGF 944

Query: 954  MLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCE 1013
             LA  DLEIRGAGE+LGD+QSG IS+IGF LY +ML  AVK+LK GKEP L   L    E
Sbjct: 945  YLAMHDLEIRGAGEVLGDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTE 1004

Query: 1014 MELRIPALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEM 1073
            + L  PALLP+DY GDV  RLSLYKR+A+C+S E +D ++ ELIDRFG LP   ++L+E 
Sbjct: 1005 INLGTPALLPQDYCGDVQERLSLYKRLANCESSETIDNIQEELIDRFGKLPPQAQSLIET 1064

Query: 1074 TLYKHQATRLGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLK 1130
               +  A  LG  KI+  A   +++F  +  +D   II L+Q   QI ++ G ++L+
Sbjct: 1065 HRLRIAAAPLGIRKIDTGANAVTLQFIPNPPVDAIKIIDLVQKNRQI-KLAGQDRLR 1120