Pairwise Alignments

Query, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1160 a.a., helicase from Burkholderia phytofirmans PsJN

 Score = 1054 bits (2725), Expect = 0.0
 Identities = 566/1112 (50%), Positives = 752/1112 (67%), Gaps = 23/1112 (2%)

Query: 46   IVTSDTPTALSLELELNYLLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITH 105
            +V      A  L  E+ +   +   +VRL PD ETLPYD+FSPHQDL+S+RL TL  +  
Sbjct: 53   VVCESAVDAQRLAQEIGFFAPEA--RVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGE 110

Query: 106  AEHSVVIVPVTTLMMRLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHG 165
                +++VP TT + R+PP S+L++  F   +G++     ++ QLT  GY  V QV   G
Sbjct: 111  GRCDILLVPATTALYRMPPASFLAAYTFSFAQGERLDEARIKAQLTLAGYEHVSQVVRPG 170

Query: 166  EFAIRGSILDIFPTGVNMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTD 225
            E+ +RGS+LD++P G  +P RI+LFDD+V++IR FDP+TQRS  PV  VRLLP +EFP D
Sbjct: 171  EYCVRGSLLDLYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFD 230

Query: 226  SSAIEGFRQRYRRRFEVIVKEPE--SVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPK 283
             +A   FR R+R  FE    +P   ++Y+ +   +  AGIE YLPLFF++ +TLF YLP+
Sbjct: 231  EAARTAFRSRWRETFE---GDPSRAAIYKDIGNGVPSAGIEYYLPLFFEDTATLFHYLPE 287

Query: 284  NTQLVTLGDIEKSARAHLQEVEIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQ 343
              QL  +GD++ + R    + + RY     D  RP+L P+ L+L  E+ F   KP  R  
Sbjct: 288  GAQLAFVGDLDAAIRRFTNDTKQRYNFLSHDRDRPILEPQRLFLSDEDFFTLAKPFARLS 347

Query: 344  FVAPNPDTNGVAAQIDARALPEVSANHKLKQPLIALQDYAEQAP-RMLFSAESEGRREAL 402
              A        A    +  LP ++ +   + P+  L+ Y +  P R+LF+AES GRRE L
Sbjct: 348  LPAN-------AGGGWSTPLPNLAIDRHAEDPVAGLRAYLDTTPNRVLFAAESAGRRETL 400

Query: 403  LELLGKIQLKPSVFSHFDEFIQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQR 462
            L+LL    L+P     F +++ SD R  L V+PL+ G  + +     ++II ETEL+G  
Sbjct: 401  LQLLADNHLRPVSSDSFQDWLTSDERFSLGVAPLANGFAVPVDG---IAIITETELYGP- 456

Query: 463  ISQQRRREKQRQISN-DTLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQL 521
            ++++  R +Q Q SN D+++++L+ELKVG P+VH +HG+  Y GLVT+D G    E+L L
Sbjct: 457  LARRAGRRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHL 516

Query: 522  EYSGGDKLYVPVSNLHLISRYSVGADGETH-LNKLGNDTWAKAKNKAIEKIRDVAAELLD 580
            EY+G  KLYVPV+ LH+ISRYS GAD E+  L+ LG+  W KAK KA ++IRD AAELL+
Sbjct: 517  EYAGDSKLYVPVAQLHVISRYS-GADPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLN 575

Query: 581  VYARRQARPGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDV 640
            +YARR  R G +  +  ++Y +FA+ F FEET DQ +AI AV+ DM S   MDRLVCGDV
Sbjct: 576  LYARRALRQGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDV 635

Query: 641  GFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAK 700
            GFGKTEVA+RAAF+AV  GKQV +L PTTLLA+QH + F DRF+DWPV I  +SRF++ K
Sbjct: 636  GFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFSDRFSDWPVRIAELSRFKSTK 695

Query: 701  EQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVD 760
            E +  ++Q+ EG VDIVIGTHKLL S+ +F+ LGL+IIDEEHRFGVRQKE +KALRA VD
Sbjct: 696  EVSAAIQQINEGTVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVD 755

Query: 761  ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 820
            +LTLTATPIPRTL MA+ G+RD S+IAT P KRLA+KTFVR  + + +REA+LRE+ RGG
Sbjct: 756  VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSVIREAMLRELKRGG 815

Query: 821  QVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTI 880
            QVY+LHN VETIE   Q +  L+PEAR+ VAHGQM ER+LERVM DF  QR NVL+CTTI
Sbjct: 816  QVYFLHNEVETIENRRQMLEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCTTI 875

Query: 881  IETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRL 940
            IETGIDVPSANTI+I RAD FGLAQLHQLRGRVGRSHHQAY+YL+   P+ +T  A++RL
Sbjct: 876  IETGIDVPSANTILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRL 935

Query: 941  EAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGK 1000
            EAI  +E+LG+GF LA  DLEIRG GE+LGD+QSG I +IGF LY +ML  AVKALK+GK
Sbjct: 936  EAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKEGK 995

Query: 1001 EPSLAQMLNQQCEMELRIPALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRF 1060
            EP L   L    E+ L   A+LP DY GDV  RLSLYKR+A+C+  +++D ++ ELIDRF
Sbjct: 996  EPDLTAPLAATTEINLHASAILPADYCGDVQERLSLYKRLANCEHNDSIDGIQEELIDRF 1055

Query: 1061 GLLPDATKNLMEMTLYKHQATRLGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQI 1120
            G LP     L+E    +  A  LG +KI+       ++F  +  ID   II ++Q    I
Sbjct: 1056 GKLPPQAHALVETHRLRLAAKPLGISKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHI 1115

Query: 1121 YRMDGPNKLKFILSAETAKDRLALVKLLLEQL 1152
             ++ G +KL+    +     R+A VK  L  L
Sbjct: 1116 -KLAGQDKLRIETRSPDLAVRVATVKETLRAL 1146