Pairwise Alignments

Query, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 713 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N1B4

 Score =  244 bits (624), Expect = 6e-69
 Identities = 164/481 (34%), Positives = 248/481 (51%), Gaps = 37/481 (7%)

Query: 85  NQTRYAGVGYFILIDDNNQILAH-------GESASMIGTSAQNFTLPN-GTNPLTTLLSQ 136
           NQ  Y+G G   LI  N +I+A+       GE  S I  S Q   + N     +T  + +
Sbjct: 250 NQKLYSGAGEMALIGGNGRIVAYTKDPSKFGEKVSDILDSKQIANMANLKRGEVTYTVDK 309

Query: 137 ARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYLSDVKESLYEVMVDY-- 194
           A+   +  L + I             +AR      WTL+    L+ V   L ++  D   
Sbjct: 310 AQGRIELYLPFGIGQ----------TDAR------WTLMLQLPLNAVMADLQKLQGDLDA 353

Query: 195 ----------LIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLSTQ 244
                     ++ + + S+ +   +LV  H I  PL   +  L+DIAQGEGDL++RL++ 
Sbjct: 354 QRKSDTFGMAMVGLLIASIGLLVIWLV-GHGIARPLKQMVAMLDDIAQGEGDLTRRLTSD 412

Query: 245 GKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGS 304
             DE+  +A  FN F  K+  M+  +    QS+ + ++        +N        E   
Sbjct: 413 RADELGSIAKGFNTFLAKLQAMITQVVTSVQSVSDSSEHTADIAIRTNIGVHKQMAEIDQ 472

Query: 305 VATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAI 364
           VATAV++M +T  ++A N  QAA AA+     A Q   ++ +T      L  E+  +  +
Sbjct: 473 VATAVHEMTATAQDVARNATQAAQAASHADQAAAQGMQIVRDTSNSIGVLAVEIGKAVGV 532

Query: 365 TQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRT 424
            Q L + S  I +IL  IR IAEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA +T
Sbjct: 533 VQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKT 592

Query: 425 QDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMN 484
           Q +T EIQ +I  +Q G   V++    +Q +++E    A +A +A+  I + ++ I+DMN
Sbjct: 593 QKATEEIQTMIQHLQQGTRDVVRVMEDSQNRTDESVQHAAKAAEALETITQAVSVINDMN 652

Query: 485 TQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDISQDMSHTLGQFK 544
           TQ+ASA EEQS V ++INRN+ NI ++        + +S A+  L  +++     + QFK
Sbjct: 653 TQIASAAEEQSAVADDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFK 712

Query: 545 I 545
           +
Sbjct: 713 V 713