Pairwise Alignments

Query, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  323 bits (827), Expect = 1e-92
 Identities = 188/542 (34%), Positives = 304/542 (56%), Gaps = 2/542 (0%)

Query: 5   LRQFTILKRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWLQIDGQLGSILSVIDVYRQ 64
           LR  +I  RL ++ V+  +      +  +K+   +L+ +K +Q    + S  ++++ Y Q
Sbjct: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75

Query: 65  DAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQNFTLP 124
            A  G +  ++AQ  A   I Q RY    YF + D    ++ H     + G   ++F  P
Sbjct: 76  QATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDP 135

Query: 125 NGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYLSDVK 184
           NG      +++  ++N +  +EY    P ++   DK++  + +  WGW + TG Y+ DV 
Sbjct: 136 NGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVN 195

Query: 185 ESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLSTQ 244
             + + +   L+ +    + +     ++  SIT P  + +  L++IAQGEGDL+++L+  
Sbjct: 196 ALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVT 255

Query: 245 GKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGS 304
           GKDE+A +A AFNLF  KI  ++  + P+ +S+   A  L    + ++  A   H+   +
Sbjct: 256 GKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDT 315

Query: 305 VATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAI 364
           VA+A+NQ+ ++  E+A +  QA  AA S    A Q + +I  T    + L  +L  +E  
Sbjct: 316 VASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQE 375

Query: 365 TQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRT 424
           TQ L   +  + ++L+VIR +AEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA RT
Sbjct: 376 TQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRT 435

Query: 425 QDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMN 484
           Q STNEI++II+++Q    SV QS +QTQ+QS   Q +A++A Q +  I   I  I   N
Sbjct: 436 QASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFN 495

Query: 485 TQLASATEEQSLVTEEINRNICNISE-LTEVSVKANESNSRAAQSLQDISQDMSHTLGQF 543
             +A A+ +QS  T+EI RN+  I+E  T+ S +AN+  + A++ L +  Q ++ +L  F
Sbjct: 496 QHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQV-AAASEQLMENGQHLARSLAVF 554

Query: 544 KI 545
           KI
Sbjct: 555 KI 556