Pairwise Alignments

Query, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  654 bits (1688), Expect = 0.0
 Identities = 347/545 (63%), Positives = 422/545 (77%)

Query: 1   MITFLRQFTILKRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWLQIDGQLGSILSVID 60
           M+  LR+FTIL+RL++MLV+AAIGT  FASFSI EQ +NLI+QKWLQ D QL ++LSVID
Sbjct: 1   MLAILRRFTILQRLILMLVLAAIGTFVFASFSINEQRNNLIKQKWLQNDAQLSTLLSVID 60

Query: 61  VYRQDAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQN 120
            + + +    +  ++AQ+ AA+L+NQ +Y   GYF+L D ++ +LA+G S   +G  A  
Sbjct: 61  THYRQSQQNILTPEDAQREAANLVNQIQYGESGYFLLFDADHTLLANGASPDQLGIKASK 120

Query: 121 FTLPNGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYL 180
            T   G N L  LL +A  +G +     + NP++   E+ L EAR +P W WTL+T +Y+
Sbjct: 121 LTSQMGGNALDKLLDKAMASGIAKASMEMRNPITGEQEEALMEARTFPAWQWTLVTTSYM 180

Query: 181 SDVKESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQR 240
           SDV ++   VM +YL IM LISVPIFAFFL+LNHSI+SPLN AI+A++DIA+GEGDL++R
Sbjct: 181 SDVNDTTISVMYNYLGIMLLISVPIFAFFLILNHSISSPLNQAIDAMKDIAEGEGDLTKR 240

Query: 241 LSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHR 300
           L TQGKDEV  LA AFN F  KI  MV  LQP+G  L+ DA  L  AV ESN S +H+H+
Sbjct: 241 LPTQGKDEVVALAIAFNNFVGKINKMVADLQPVGHDLNQDADRLFNAVAESNASVDHLHQ 300

Query: 301 ETGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKA 360
           ET SVATA+NQMLSTTHEMAS+TQQAADAA SVK QAQ SK  +D TV +T KLVQELK 
Sbjct: 301 ETSSVATAINQMLSTTHEMASSTQQAADAANSVKQQAQDSKQQMDGTVENTHKLVQELKN 360

Query: 361 SEAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRAL 420
           +E ITQ LG +S QIGSILDVIR IA+QTNLLALNAAIEAARAG+HGRGFAVVADEVRAL
Sbjct: 361 AEGITQHLGVSSEQIGSILDVIRGIADQTNLLALNAAIEAARAGAHGRGFAVVADEVRAL 420

Query: 421 ANRTQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHI 480
           ANRTQDSTNEIQKII++IQ GV +VM SNS TQ QS ELQ +AQ  G+++  ILELIAHI
Sbjct: 421 ANRTQDSTNEIQKIITDIQNGVANVMHSNSDTQTQSVELQQQAQAVGESLNTILELIAHI 480

Query: 481 SDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDISQDMSHTL 540
           SDMNTQLASATEEQSLVTEEINRNIC+I+EL+EVSVKANESN  AA+SL+ ISQ  +  L
Sbjct: 481 SDMNTQLASATEEQSLVTEEINRNICSITELSEVSVKANESNRMAAESLRQISQTSAKIL 540

Query: 541 GQFKI 545
           GQFK+
Sbjct: 541 GQFKV 545