Pairwise Alignments

Query, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  300 bits (767), Expect = 3e-85
 Identities = 185/561 (32%), Positives = 299/561 (53%), Gaps = 10/561 (1%)

Query: 185 RSLEFQRLAVKIFDRLPLALVITNASHSVLYANDAFKLMVCLQPDDILAFNPEQFF-SPS 243
           R  E QRLA  +F+     +VI +A++ VL  NDA   +   + +++L  +  +   +P 
Sbjct: 396 RQAEQQRLAATVFEAASEGMVIMDATYRVLAVNDACCALSGYEREELLGRSIARIAGTPE 455

Query: 244 EPHEIASLFNHLSEGKMWQGELVGLRNNGETFYLDLTVTVFRESHSADLGFAWLFSDVSE 303
              +  ++ + L     WQGEL+  R +GE +   + +   R+S  +        SD+S 
Sbjct: 456 SQRQYEAMRDALERHGHWQGELIEKRKSGEVYPQWVQLREVRDSDDSVTHVVAFISDLSV 515

Query: 304 RKKAAQLIKYQANNDSLTGLANRNALFRQIQELINADSLTP-GFSFMLMDLDNFKQVNDT 362
           R+K  + ++Y  + D LTGLANR     ++ E            + + +DLD FK +N++
Sbjct: 516 RRKIEERLRYLTHYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYIDLDRFKLLNES 575

Query: 363 YGHDKGDVLLVQMVEQVKICLDPQAVFARLGGDEFAILLPGVVTQRELSQLADKINKQVY 422
            GH+  D LL ++  ++   L      ARL GDEF +LL    +   L+ L  ++ +++ 
Sbjct: 576 LGHEAADALLREVSRRLSTTLAEADTIARLSGDEFVVLLDAYGSLSSLAHLGSRLLQRI- 634

Query: 423 RRYELSHDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQMQQ 482
           R+  +  ++ +  S SIG++  P+++ D E LL  A+ AM  +K  G N   FFT++ Q 
Sbjct: 635 RKPMVIDEQELVISASIGVSLLPDNSRDAEALLRQANIAMQQAKHLGGNTLQFFTDRPQA 694

Query: 483 NAERIANLHTLLKQALEQNAFELYFQPIVDATTGLIVRAEVLLRWQH-EGQFISPDEFIP 541
           ++     L   L++ALE    E+++QP +      +  AE L+RW+H E   ++P +FIP
Sbjct: 695 SSMHYLQLENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGLVAPAQFIP 754

Query: 542 IAENSGLIVSIGRCVRQAVMQTIVEMQALGWPMSLAINVSTFEFWSHELQDEFCDSFTDI 601
           +AE +GLI+ +G  V +   +   + Q  G     AI VS         Q  F      +
Sbjct: 755 LAEETGLIIPLGEFVLREACRQARQWQQDGLA---AIRVSVNLSVKQLRQGNFVSLVRQV 811

Query: 602 IEGLGVEDFPYELITLEITESLLMKKHAHLIQVLNELRARGIKISLDDFGTGYSSLSYLA 661
           +E  G+   P  ++ LE+TES L+    + I +  +LRA G+K+++DDFGTG+SSLSYL 
Sbjct: 812 LEETGL---PATMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYLK 868

Query: 662 NFPIDQIKIDKSFIDRLAEGERHLALIEAIVRLSHALNLRVTAEGVETQEQLQVMMDNHI 721
            FP+D +KID+SFI  L    +  A+  AI+ + H+L  +V AEGVETQ Q+  +  NH 
Sbjct: 869 RFPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANHC 928

Query: 722 QEIQGYLFYKPIPKAVFFELL 742
            EIQGYL   P+P   F ELL
Sbjct: 929 DEIQGYLLSPPVPALQFAELL 949