Pairwise Alignments

Query, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 778 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  273 bits (699), Expect = 2e-77
 Identities = 173/501 (34%), Positives = 261/501 (52%), Gaps = 14/501 (2%)

Query: 251 LFNHLSEGKMWQGELVGLRNNGETFYLDLTVTVFRESHSADLGFAWLFSDVSERKKAAQL 310
           L  H  E   ++ E+   R +G   ++     V R ++   + +     D+SERK   Q 
Sbjct: 287 LMEHQGEVLNFESEVY--RRDGTRIWISENAHVVRGANGEFICYEGTVQDISERKHYQQQ 344

Query: 311 IKYQANNDSLTGLANRNALFRQIQE-LINADSLTPGFSFMLMDLDNFKQVNDTYGHDKGD 369
           ++ QAN+D LTGL NR  L  +I++ L  A  L    + + +DLDNFK +ND  GH  GD
Sbjct: 345 LERQANHDLLTGLPNRILLNDRIEQGLARAARLGYYLTLVFIDLDNFKFINDGLGHVAGD 404

Query: 370 VLLVQMVEQVKICLDPQAVFARLGGDEFAILLPGVVTQRELSQLADKINKQVYRRYELSH 429
            LL  +  ++   L      AR+GGDEF ++L        +  L +++  ++ R   L+ 
Sbjct: 405 ELLKSIAARLAGSLRGSDTVARVGGDEFVLVLSDHYRISTVISLLERVLNEIRRPVTLA- 463

Query: 430 DKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQMQQNAERIAN 489
            +      SIG+A FP D  D + LL  AD AMY +K  GRN + FFT  + + A+   N
Sbjct: 464 GREFQVGASIGVAMFPGDGEDAQTLLKHADIAMYAAKKRGRNNFQFFTHDLNRIADERLN 523

Query: 490 LHTLLKQALEQNAFELYFQPIVDATTGLIVRAEVLLRWQH-EGQFISPDEFIPIAENSGL 548
           L   ++ ALE++ F +++QP VDA+   IV  E L RW   +   I PD FIP+AE SGL
Sbjct: 524 LEAAMRAALERDEFSVHYQPKVDASRR-IVGVEALARWTDAQLGVIGPDRFIPVAEESGL 582

Query: 549 IVSIGRCVRQAVMQTIVEMQA-LGWPMSLAINVSTFEFWSHELQDEFCDSFTDIIEGLGV 607
           I+ +   V +       +  A    P+ +A+N+S   F   ++ D  C    D+      
Sbjct: 583 IMPLTLAVLRRAFSDARQWNAGRAIPLMVAVNLSPLLFLGDDVVDRVCTVLDDV------ 636

Query: 608 EDFPYELITLEITESLLMKKHAHLIQVLNELRARGIKISLDDFGTGYSSLSYLANFPIDQ 667
              P   + LEITE++ +      + +L E +ARG ++++DDFGTGYS+LSYL  FP+D 
Sbjct: 637 -GLPPNQVELEITETVFLGDGTRAVAILAEFKARGFRLAMDDFGTGYSALSYLRRFPLDI 695

Query: 668 IKIDKSFIDRLAEGERHLALIEAIVRLSHALNLRVTAEGVETQEQLQVMMDNHIQEIQGY 727
           IKID+S +  L + E    +  A + L  +L+  V AEGVE   Q   +  N   E QGY
Sbjct: 696 IKIDRSLVTGLEQEEEVAMIARAAISLGKSLHKTVVAEGVENAAQFDFLCRNGCDEFQGY 755

Query: 728 LFYKPIPKAVFFELLAKQAVI 748
           L  +P+P A F  LLA   ++
Sbjct: 756 LLSRPLPAAQFTALLAAGGIV 776