Pairwise Alignments

Query, 752 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 639 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  287 bits (734), Expect = 1e-81
 Identities = 173/482 (35%), Positives = 267/482 (55%), Gaps = 21/482 (4%)

Query: 271 NGETFYLDLTVTVFRESHSADLGFAWLFSDVSERKKAAQLIKYQANNDSLTGLANRNALF 330
           +GE  ++       R++       A   +D++ERK   + ++Y A++D LTGL NR  L 
Sbjct: 163 SGEYRWIASRGIAVRDARGVATLMAGSVTDITERKLHEERMRYLAHHDQLTGLPNRLLLA 222

Query: 331 RQI-QELINADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDVLLVQMVEQVKICLDPQAVF 389
            ++ Q L  A       + + +DLD FK +ND+ GH++GD LL  +  +++ CL      
Sbjct: 223 DRLPQALTRAKRQQSRAAVLFVDLDRFKNINDSLGHNQGDRLLQSVARRLQECLRQSDTI 282

Query: 390 ARLGGDEFAILLPGVVTQRELSQLADKINKQVYRRY-ELSHDKGVYSSVSIGIARFPEDA 448
            R GGDEF ++L  +    +  Q+  K+ + +   Y E  +D   + + SIGIA +P+D 
Sbjct: 283 VRQGGDEFIVILEDLQLPEQAGQIGAKLLETLASPYREDGYD--FFLTASIGIALYPDDG 340

Query: 449 LDLEQLLNCADQAMYISKANGRNRYHFFTEQMQQNAERIANLHTLLKQALEQNAFELYFQ 508
            D + LL  AD AMY  K++G N   F+T +M +  +   +L   L++ALE++  +LY+Q
Sbjct: 341 DDADTLLRNADTAMYEGKSSGGNTVRFYTGRMNERLQSRVSLENGLRRALERDELQLYYQ 400

Query: 509 PIVDATTGLIVRAEVLLRWQHEGQFISPDEFIPIAENSGLIVSIGRCVRQAVMQTIVE-- 566
           P +D  +G ++ AE LLRW   G+ I PD+FIP+AE +GLIV IG  V    +       
Sbjct: 401 PQIDLASGRLLGAEALLRWNDGGRLIPPDQFIPVAEETGLIVPIGLWVLDTAIARAAAWR 460

Query: 567 -----MQALG-WPMSLAINVSTFEFWSHELQDEFCDSFTDIIEGLGVEDFPYELITLEIT 620
                 Q +G  P  +AIN+S  +FW   + +        ++  L  E  P   I LE+T
Sbjct: 461 RHWQLRQGMGATPPRIAINLSARQFWGGGIAEH-------VLLRLEREGLPPSTIELEVT 513

Query: 621 ESLLMKKHAHLIQVLNELRARGIKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLAE 680
           ES+L+++ A  ++ L  LR  G+ ++LDDFGTGYSSLSYL   PID +KIDKSFI  L E
Sbjct: 514 ESVLLRQEADCLEELRRLREAGVGLALDDFGTGYSSLSYLRLLPIDTLKIDKSFIFPLDE 573

Query: 681 GE--RHLALIEAIVRLSHALNLRVTAEGVETQEQLQVMMDNHIQEIQGYLFYKPIPKAVF 738
            +     A++ AI+ ++H L  +V AEGVE Q QL+++        QGYL  +P+P   F
Sbjct: 574 DQDGEAAAIVRAILAMAHTLGHKVVAEGVERQTQLELLRTMGCDSFQGYLESRPLPPEAF 633

Query: 739 FE 740
            +
Sbjct: 634 LQ 635