Pairwise Alignments

Query, 404 a.a., sun protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

 Score = 94.7 bits (234), Expect = 5e-24
 Identities = 80/280 (28%), Positives = 129/280 (46%), Gaps = 22/280 (7%)

Query: 145 AALNRPPKRFLRVNGLKVSRDELVQKLATEFVSTQVVDSVDSALEVTSDSALFRTNSFKE 204
           AA  RP ++ +RVN LK+S  E  Q+ A +      V   ++   + +D +L    +  E
Sbjct: 60  AACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAE 119

Query: 205 ---GLFEQQDAGSQRVAAALDAKPGM--RVIDACAGAGGKTLHIAAQMQGKGRLLAMDVE 259
              GLF  Q+A S    +AL         V+D  A  G KT  +AA M  +G L+A +  
Sbjct: 120 HMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFS 179

Query: 260 QWKLDNLKERARRNGAHNIETRLIVGSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDAKW 319
             ++  L     R G  N       G      L    D VL+D PCSG G ++++PDA  
Sbjct: 180 ASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMK 239

Query: 320 RDTADRLPVLMELQKHILSSYSRMVKVGGIVVYATCSIFPCENR----------GQVDAF 369
             + + +  +   QK ++ S  + +KVGG +VY+TC++   EN+          G   +F
Sbjct: 240 NWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSF 299

Query: 370 -----LAENPNFRLLEDE--TISPADTGFDGFYLAKLERI 402
                L E+ +  L E+    I P     +GF++AK+ ++
Sbjct: 300 ESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 339