Pairwise Alignments

Query, 404 a.a., sun protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

 Score =  146 bits (369), Expect = 1e-39
 Identities = 97/288 (33%), Positives = 143/288 (49%), Gaps = 13/288 (4%)

Query: 123 GCPEWLDTMGREQLGASWEKERAALNRPPKRFLRVNGLKVSRDELVQKLATEFVSTQVVD 182
           G P WL  + +E     W++   A N     +LRVN    +R E    L    + T    
Sbjct: 141 GHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHA 200

Query: 183 SVDSALEVTSDSALFRTNSFKEGLFEQQDAGSQRVAAALDAKPGMRVIDACAGAGGKTLH 242
             + AL + +   + +   F EG    QDA +Q     L  + G  ++D CA  GGKT H
Sbjct: 201 QAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAH 260

Query: 243 IAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRLIVGSKTIKRLKLTA---DRV 299
           I  +   + +++A+D ++ +L  ++E  +R     +  ++I G     +        DR+
Sbjct: 261 ILERTP-ESQVVAIDCDETRLKRVRENLQRL---ELTAQVICGDARYPQQWWQGEQFDRI 316

Query: 300 LLDVPCSGLGVLKRNPDAKWRDTADRLPVLMELQKHILSSYSRMVKVGGIVVYATCSIFP 359
           LLD PCS  GV++R+PD KW   AD +  L ELQ+ IL +  + +K GG +VYATCSI P
Sbjct: 317 LLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITP 376

Query: 360 CENRGQVDAFLAENPNFRLLEDE------TISPADTGFDGFYLAKLER 401
            ENR QV AFL   P+ RL+  E       I P +   DGFY A L +
Sbjct: 377 QENRLQVKAFLERTPDARLVGSEPAQPGRQILPGEEAMDGFYYAVLSK 424