Pairwise Alignments

Query, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 297 a.a., site-specific tyrosine recombinase XerD from Pantoea sp. MT58

 Score = 95.1 bits (235), Expect = 2e-24
 Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 15/204 (7%)

Query: 74  HFFYEHVLKRDFTIQLSLPKRPHKLPQLLSCQDIAALLYHCQ-----NLKQRAMLALCYG 128
           + + E +   D +  LS PK P +LP+ LS   +  LL          L+ +AML L Y 
Sbjct: 84  YLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQAPNIDIPLELRDKAMLELLYA 143

Query: 129 CGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILLRQYWQAYHPVEWLF 188
            GLRVSEL  + ++DI  ++ +++V  GKG  +R V L    +  L QY +   P  WL 
Sbjct: 144 TGLRVSELIGLTLSDISLRQGVVRVI-GKGDKERLVPLGEEAVYWLEQYMEHGRP--WLL 200

Query: 189 ASTYHDVVYPLHES------TFRKALAKAARLASI-TKPCSPHSLRHAYATHQLQAGMPL 241
                DV++P + +      TF   +   A LA I ++  SPH +RHA+ATH L  G  L
Sbjct: 201 NGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHVMRHAFATHLLNHGADL 260

Query: 242 HQLQAQLGHHSIKSTERYLHWSPE 265
             +Q  LGH  + +T+ Y H + E
Sbjct: 261 RVVQMLLGHSDLSTTQIYTHVATE 284