Pairwise Alignments

Query, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 291 a.a., integrase from Burkholderia phytofirmans PsJN

 Score =  143 bits (360), Expect = 5e-39
 Identities = 90/276 (32%), Positives = 144/276 (52%), Gaps = 10/276 (3%)

Query: 1   MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPLDNITDEQLTAYFRYLNLEWH 60
           +S L Q+  D++ +R  + +T++ YL+ + +   +  +  D  T E L  Y  YL ++  
Sbjct: 8   VSPLRQRMIDDMRMRQLAPKTQDIYLHIVREFARFLGRSPDTATVEDLRRYQLYL-VDHG 66

Query: 61  HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR-PHKLPQLLSCQDIAALLYHCQNLKQ 119
            S  +L   + G+ FF+   L R   I    P R P  LP +LS  ++  L+    NLK 
Sbjct: 67  TSAVSLNHAITGLKFFFTVTLDRPELIVRMQPVRVPRILPVVLSPDEVRRLIEAAGNLKH 126

Query: 120 RAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILLRQYWQ 179
           +  L++ YG GLR SE+  +KV D+D +R  L++ QGKG  DR+ +LSP LL  LR +W+
Sbjct: 127 QTALSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRRDRYAMLSPVLLERLRVWWR 186

Query: 180 AYHPV------EWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATH 233
                       WLF     D +  L      +A+  AA  A I K  S H+LRH++ATH
Sbjct: 187 MARAQGKMFDGGWLFPGL--DPLDQLSTRQLNRAIHAAAEAAHIDKRVSMHTLRHSFATH 244

Query: 234 QLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELGHQ 269
            L+  + +  +Q  LGH  +++T  Y+  + +L H+
Sbjct: 245 LLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHE 280