Pairwise Alignments

Query, 269 a.a., OmpA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 230 a.a., OmpA/MotB domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score = 60.8 bits (146), Expect = 2e-14
 Identities = 75/274 (27%), Positives = 112/274 (40%), Gaps = 61/274 (22%)

Query: 1   MMKKTLISVLVFSVFTASIAT---VSARVSLQNQPLLIEPQTEWTIEQEEDDGEALIGLG 57
           MMK +LI  L  S     + T   +++  S  N P   E QT       +    ALIG  
Sbjct: 1   MMKPSLIKSLPASKLAIVVVTGALIASGCSTVN-PYTNEQQTA------KATTGALIGAV 53

Query: 58  GGALLG------------ALVGGPVGAVVGGITGTLIGQSVADTELVSVTLKNPQQHIAV 105
            GA +G            AL+G   GA VGG  G  +   V +T+L              
Sbjct: 54  AGAAVGVASSSKSDRGKGALIGAASGAAVGGGIGYYM--DVQETKL-------------- 97

Query: 106 QRQQVTSLTVKQLASEQRAAEYASTQKHLDALLAEQQQLLSELALGMNVQFRTGSSELEA 165
            RQQ+ S  V             S  +  D ++         L +   V F    +EL  
Sbjct: 98  -RQQLASTGV-------------SVTRDGDNIV---------LNMPNEVTFGVDQTELSD 134

Query: 166 DFLPQLDNVATVMKRSSESNLELKGYAERRGDWRDNQSLSEHRLLEVRDYLIQQGVAPAR 225
                L++VA V K  S++ L + GY +  G    N  LS+ R  EV +YL+ +GVA AR
Sbjct: 135 GAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDSYNLRLSQVRASEVGNYLMSKGVASAR 194

Query: 226 MTTQALGAAMSLNEQLDSESDVSDRRVTLTIPPT 259
           + ++ +G A  +    ++     +RRV + + PT
Sbjct: 195 VKSKGMGEASPIASNANAAGRAQNRRVEIVLTPT 228