Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 241 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  121 bits (304), Expect = 1e-32
 Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 12/231 (5%)

Query: 3   RIAIVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEIDGG 62
           RI IVEDE AIRE    VL+QHG++  T  D  SA+   +   PDL ++D         G
Sbjct: 16  RILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWMFPG--GSG 73

Query: 63  FMLCQSLRAMSNT--LPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFR 120
             L + LR    T  +P+I LTAR  + D V GL +GADDY++K  S   L AR+ A+ R
Sbjct: 74  IQLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVMR 133

Query: 121 RSELAASQTPQENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHALAKHPGHVRSRH 180
           R    A+ T  E  ++   L +D    +V      +E+  TEF ++H    HP  V SR 
Sbjct: 134 R----AAPTALEEPIDVQGLVLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSRE 189

Query: 181 ELMQE---AKIFVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGYRWDS 228
           +L+       ++V+D T+  H++R+RK  +  +     I TV G GYR+ +
Sbjct: 190 QLLDNVWGTNVYVEDRTVDVHIRRLRKA-VEPSNHDRLIQTVRGAGYRFST 239