Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 233 a.a., two component transcriptional regulator, winged helix family from Marinobacter adhaerens HP15

 Score =  268 bits (684), Expect = 9e-77
 Identities = 129/229 (56%), Positives = 170/229 (74%), Gaps = 3/229 (1%)

Query: 2   KRIAIVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEIDG 61
           K + ++EDE AIR+NY+   ++ GY V  + DR SA       LPDLAIID+GLG+E +G
Sbjct: 3   KHVVLIEDEPAIRDNYRAAFERRGYRVSAHGDRASAWQVLRQSLPDLAIIDVGLGDEPEG 62

Query: 62  GFMLCQSLRAMSNTLPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFRR 121
           GF LCQ LR++S TLPIIFLTARDSD D+V GLRLGADDY++K++S  HL AR+ AL RR
Sbjct: 63  GFALCQDLRSLSQTLPIIFLTARDSDIDSVHGLRLGADDYVTKDMSLDHLLARVTALLRR 122

Query: 122 SE--LAASQTPQENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHALAKHPGHVRSR 179
           ++    A Q P E +LERG L+++ +RM V W++  I+LTVTEFWM+H+L +HPGHVRSR
Sbjct: 123 ADAWAEALQKPDE-VLERGKLSLNVDRMTVAWDETPIDLTVTEFWMLHSLVQHPGHVRSR 181

Query: 180 HELMQEAKIFVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGYRWDS 228
            +LM+ A   +DD+T+TSH+KRIR+KF      FD I T YGMGYRW++
Sbjct: 182 EQLMEAASTVLDDNTVTSHIKRIRRKFQQIDATFDGIQTAYGMGYRWNA 230