Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 229 a.a., two-component system response regulator CreB from Escherichia coli Nissle 1917

 Score =  125 bits (313), Expect = 9e-34
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 8/222 (3%)

Query: 6   IVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEIDGGFML 65
           +VEDE  I +    +LQQ G++V+ +      +     ++PD+ I+D+GL +    GF L
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDI--SGFEL 65

Query: 66  CQSLRAMSNTLPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFRRSELA 125
           C+ L A+   LP++FLTAR  + D + GL +GADDY++K  S   + AR+  L RR +  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 126 ASQTPQENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHALAKHPGHVRSRHELMQ- 184
           ++ +P   ++  G   ++    Q+ W    + LT  EF ++  L K PG V SR +LM  
Sbjct: 126 STPSP---VIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDS 182

Query: 185 --EAKIFVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGY 224
             E      D T+ +H+K +R K     P+   I+T  GMGY
Sbjct: 183 VWEDAQDTYDRTVDTHIKTLRAKLRTINPDLSPINTHRGMGY 224