Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 233 a.a., two component transcriptional regulator, winged helix family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  170 bits (430), Expect = 2e-47
 Identities = 96/234 (41%), Positives = 141/234 (60%), Gaps = 10/234 (4%)

Query: 1   MKRIAIVEDEAAIRENYKDVLQQHGYSVQTYADRPSAMLAFNTRLPDLAIIDIGLGNEID 60
           M RIA+V+D+  I  +    L+  G+ V+TY D  SA+ AF  R+P+L + DI +     
Sbjct: 1   MSRIALVDDDRNILTSVSITLEAEGFEVETYNDGQSALDAFTRRMPELGVFDIKMPRM-- 58

Query: 61  GGFMLCQSLRAMSNTLPIIFLTARDSDFDTVCGLRLGADDYLSKEVSFPHLTARLAALFR 120
            G  L Q +R  S  +P+IFLT++D + D V GLR+GADDY+ K  S   L  R+ AL R
Sbjct: 59  DGMDLLQRVRQKSR-MPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLR 117

Query: 121 RSELAAS----QTPQENLLERGPLTIDANRMQVYWNQIAIELTVTEFWMVHALAKHPGHV 176
           R +  A+       +  ++ RG LT+D  R  V W    + LTVTEF ++ ALA+ PG V
Sbjct: 118 RQQAVANHEAGDIDESKVMVRGNLTMDPLRHAVSWKGEDVALTVTEFLLLQALAQRPGFV 177

Query: 177 RSRHELMQEA---KIFVDDSTITSHVKRIRKKFMAAAPEFDCIDTVYGMGYRWD 227
           +SR +LM  A   +++VDD TI SH+KR+RKK  +    F  I+T+YG+GY+++
Sbjct: 178 KSRDQLMDVAYDDQVYVDDRTIDSHIKRLRKKMRSVDENFTAIETLYGIGYKYN 231