Pairwise Alignments

Query, 687 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 473 a.a., histidine kinase from Herbaspirillum seropedicae SmR1

 Score = 86.3 bits (212), Expect = 3e-21
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 18/299 (6%)

Query: 394 ILTIMSMGTLALFFFASSISNRIRKLRDEAENAIDSQGRVRNHLKP--SKARDEIGDLSR 451
           +L  +    L  ++F+  I +        A   +D +      L+P  S   DE+ DL R
Sbjct: 172 LLASLVFALLLAWYFSHPIGHLKNAFNQAANGNLDLE------LEPVMSARNDELADLGR 225

Query: 452 SFASIVGRLGQYTHYLENMSSRLSHELRTPVAVVRSSLEHLNLQTLDKDTQKYVDRAQEG 511
            F  +  +L         +   +SHELR+P+A ++ ++    +Q  DK     ++R +  
Sbjct: 226 DFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDK-LDLTLERIERE 284

Query: 512 VSRLSMILNNMSEATRLEQSLTQADVTKFPLSQVVSGCMQGYQMTYPEQRFSIKVPDQ-- 569
             R+  ++  +   +RLE ++  +      +  ++   +     ++  +     V DQ  
Sbjct: 285 SVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMIN--DASFEAEAIGKHVDDQLD 342

Query: 570 -PLMMQGVPEYIAQLMDKLIANAIEFCHQGSSIEV--TLTQVGKQATLLISNLGPQLPVD 626
             + ++G PE + + ++ ++ NAI+    G+++++   L ++ K   L I + GP +P +
Sbjct: 343 CRVQVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEE 402

Query: 627 MSEQIFDSMVSVRDNQTQEKPHLGLGLYIARLVTEFHQGNILARNRSENDGVDILVTLP 685
               IF+        ++    H GLGL IAR + E HQG I A NRS N G+ + +TLP
Sbjct: 403 EMNSIFELFFRSSRTKSNSSGH-GLGLSIARRIVEAHQGFIQAANRS-NGGLRVDITLP 459