Pairwise Alignments

Query, 687 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 572 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  123 bits (308), Expect = 3e-32
 Identities = 109/451 (24%), Positives = 202/451 (44%), Gaps = 28/451 (6%)

Query: 254 SSRIWVIDKHGRVLAKSGDIRDSNSVWTRTLDDENSNGLWQRFQRDYLHPLYYKILTKPP 313
           S  ++V D  G +LA++   + S  V    L ++N+         D+L+ ++  I     
Sbjct: 132 SLELFVFDPAGNILARAEGAKRSEWV---ALSEQNAPK--PTIITDFLNGIWELIAKLVG 186

Query: 314 KDFIDSLRDSTELNGSHIQKALAGQQTSTWRLTPDNKAVVLAAASPIWIDNNVMGAVVAE 373
           ++ +  L    +   S +  AL+G+ T    + P    +  A  +PI +   V G V   
Sbjct: 187 QERLPLLPPGADQARSLLPGALSGRTTIENSVDPSGNQI-FAVGTPILLGGEVKGIVALT 245

Query: 374 ETTHGIRTLRNRALEKLFNVILTIMSMGTLALFFFASSISNRIRKLRDEAENAIDSQGRV 433
             +  I  L     E+   + +  + +        A +I+N +  L   AE   D   R 
Sbjct: 246 TASGEIDALVQNEREQFLQMFMVALLVSIGLSLVLAGTIANPLSDLAAAAELGRDRNARK 305

Query: 434 RNHLKPSKAR--------DEIGDLSRSFASIVGRLGQYTHYLENMSSRLSHELRTPVAVV 485
            N   P + R        DEIG LS +   +V  L       E  ++ ++HE++ P+A +
Sbjct: 306 MN---PGRVRIPDLTARPDEIGRLSGALRGMVAALYDRIDANEQFAADVAHEIKNPLASL 362

Query: 486 RSSLEHLNLQTLDKDTQKYVDRAQEGVSRLSMILNNMSEATRLEQSLTQADVTKFPLSQV 545
           RS+   L +   +   Q+ ++  +  V RL  +++++S A+RL+  L + +   F L ++
Sbjct: 363 RSATGTLRVAKREDQRQRLLEVIEHDVRRLDRLVSDISNASRLDSELVKEEEETFDLIRM 422

Query: 546 VSGCMQGYQMTYPEQ--RFSIKVPDQPLMMQGVPEYIAQLMDKLIANAIEFCHQGSSIEV 603
           +      +      Q   F   +P  P+ +QG+   +AQ+   L++NAI FC  G ++ +
Sbjct: 423 LRALTDFHAEEAQTQGIDFITDLPPGPMTIQGLEPRLAQVFVNLLSNAISFCESGDAVRL 482

Query: 604 TLTQVGKQATLLISNLGPQLPVDMSEQIFDSMVSVRDNQTQEKPHLGLGLYIARLVTEFH 663
            + +   +A +++ + GP +P +   +IF    S R  + Q   H GLGL I++ + + H
Sbjct: 483 WVRRRDNRALIVVEDTGPGIPEEALTKIFTRFYSERP-ERQFGNHSGLGLAISKQIIDAH 541

Query: 664 QGNILARN--RSEND------GVDILVTLPL 686
            G I A N   +E+D      G   +V LPL
Sbjct: 542 GGVIWAENIRPTEDDITSAPLGARFVVGLPL 572