Pairwise Alignments

Query, 320 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., PAS:GGDEF from Pseudomonas syringae pv. syringae B728a

 Score =  131 bits (330), Expect = 2e-35
 Identities = 98/307 (31%), Positives = 148/307 (48%), Gaps = 40/307 (13%)

Query: 17  TILNSLDALVYVSDLHTYELLYLNDYGTTIWGEPTGKKCYQLLQAGQNSPCSFCTNHKLI 76
           ++L S++A+++  D  T  ++Y++     I+G   G      L     S          +
Sbjct: 49  SLLVSVNAVLWAFDWETQHMIYVSPAYERIFGRSAG------LLLADYSEWRDSIYPDDL 102

Query: 77  NHAGNSTTVHVWEFKNTYNNRWYQC--RDQAIRWTDG------------RLVRIEIATDI 122
           N+A  S    +   K +  +R Y+    D  +RW               RL+ + IA DI
Sbjct: 103 NYAERSLNEVIE--KGSIEDREYRIIRADGEVRWLSDKCFVSHRADASQRLIVVGIAEDI 160

Query: 123 TDRKQMEEALIEAKSTAERLANTDELTKLYNRRAFFNLG---LSIAQQSGQALAFIMFDI 179
           T++KQ+E  L       +RLA TD LT+  NRR FF        +A+ +G  LAF++ DI
Sbjct: 161 TEKKQLENEL-------QRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDI 213

Query: 180 DRFKHVNDRWGHTTGDAALIHIAKLTQAILKPVDILGRLGGEEFGILLPDLHHEQACQLA 239
           D FK VND +GH  GD  L  IA+  ++ L+  D+ GR+GGEEF  + P    + A Q+A
Sbjct: 214 DDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIA 273

Query: 240 ESIRCRFEEQPLALNGQIIKCTASFGIASITIPVIHSEKEAQNLLETLFNSADQAMMQAK 299
           E ++   + Q     G     TAS G+ ++              LETL+  AD AM QAK
Sbjct: 274 ERLQREIQRQNFQSAGTTFSITASQGLTNL--------GPDDPSLETLYGRADAAMYQAK 325

Query: 300 RNGRNQV 306
           R G+NQ+
Sbjct: 326 RQGKNQI 332