Pairwise Alignments

Query, 320 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 698 a.a., diguanylate cyclase with PAS/PAC sensor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  131 bits (329), Expect = 6e-35
 Identities = 77/191 (40%), Positives = 108/191 (56%), Gaps = 18/191 (9%)

Query: 121 DITDRKQMEEALIEAKSTAERLANTDELTKLYNRRAFFNL---GLSIAQQSGQALAFIMF 177
           D+TD  Q+E+ L       E+LA TDELT + NRR F        + AQ+ G+ L+ ++ 
Sbjct: 496 DVTD--QVEDTL-----RLEQLATTDELTGVANRRHFMARLEDEAARAQRYGRPLSVLLL 548

Query: 178 DIDRFKHVNDRWGHTTGDAALIHIAKLTQAILKPVDILGRLGGEEFGILLPDLHHEQACQ 237
           D D FK +ND WGH  GD  L HI  +    L+  D++GRLGGEEFG+LLP+   E+A +
Sbjct: 549 DADHFKSINDTWGHEAGDMVLRHITDVMGLSLRENDLIGRLGGEEFGVLLPETAQERALR 608

Query: 238 LAESIRCRFEEQPLALNGQIIKCTASFGIASITIPVIHSEKEAQNLLETLFNSADQAMMQ 297
            AE IR   E+ P+A+    + CT S G A          + A + L+ L   AD  +M+
Sbjct: 609 TAERIRAAVEDAPVAVRDVWVGCTVSVGAAEY--------RGANDSLDDLIRRADHMLMR 660

Query: 298 AKRNGRNQVCS 308
           AK  GRN+VC+
Sbjct: 661 AKEEGRNRVCA 671