Pairwise Alignments

Query, 320 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  136 bits (342), Expect = 2e-36
 Identities = 84/214 (39%), Positives = 118/214 (55%), Gaps = 18/214 (8%)

Query: 110 DGRLVRIEIATDITDRKQMEEALIEAKSTAERLANTDELTKLYNRRAFF---NLGLSIAQ 166
           DG+ V + IA DITDRK++E+AL+       R A TD LT + NRR FF      +  A 
Sbjct: 789 DGKPVVLSIARDITDRKRLEQALM-------REATTDPLTGIRNRRQFFVDAEREMGRAV 841

Query: 167 QSGQALAFIMFDIDRFKHVNDRWGHTTGDAALIHIAKLTQAILKPVDILGRLGGEEFGIL 226
           + G+ LA +M D+DRFK VNDR+GH  GDA L+   +  Q  L+  DILGRLGGEEF  +
Sbjct: 842 RYGRPLAVLMLDLDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAV 901

Query: 227 LPDLHHEQACQLAESIRCRFEEQPLALNGQIIKCTASFGIASITIPVIHSEKEAQNLLET 286
           L +   + A   AE +R   EE  +  +GQ ++CT S G+A                L+ 
Sbjct: 902 LLETDLDDALAAAERLRRAVEEMDVPFSGQRLRCTVSIGLA--------LRGPGDGALDD 953

Query: 287 LFNSADQAMMQAKRNGRNQVCSATELANFAQNNH 320
           +   AD A+  AK  GRN+V  A  + + A++ +
Sbjct: 954 ILRRADSALYAAKEAGRNRVMLARAVNSGAEDQN 987