Pairwise Alignments

Query, 320 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 730 a.a., diguanylate cyclase with PAS/PAC sensor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  121 bits (303), Expect = 6e-32
 Identities = 78/204 (38%), Positives = 106/204 (51%), Gaps = 19/204 (9%)

Query: 113 LVRIEIATDITDRKQMEEALIEAKSTAERLANTDELTKLYNRRAFFNLGLSIAQQS---G 169
           +V   I TD T+ ++ +E L        +LA TD LT L NRR F        Q+    G
Sbjct: 527 IVYCGIITDTTEHREAQERL-------RQLATTDGLTGLANRRRFLEALEHEVQRHRRYG 579

Query: 170 QALAFIMFDIDRFKHVNDRWGHTTGDAALIHIAKLTQAILKPVDILGRLGGEEFGILLPD 229
             LA I  D+DRFK VND WGH  GD  L  +A + +A ++ VD +GR+GGEEF +LLPD
Sbjct: 580 TPLALISIDVDRFKRVNDTWGHAVGDEVLRALAGICRAEVRDVDTVGRIGGEEFAVLLPD 639

Query: 230 LHHEQACQLAESIRCRFEEQPLALNGQIIKCTASFGIASITIPVIHSEKEAQNLLETLFN 289
              E+A  +AE +R   E  PL      +  T S G+         S     +  +TL  
Sbjct: 640 TAPEEAMAVAERLRAGVEAAPLLTTAGPLTVTLSLGV---------SASPPCDGADTLLR 690

Query: 290 SADQAMMQAKRNGRNQVCSATELA 313
            AD+A+ +AK  GRN+V  A +LA
Sbjct: 691 EADRALYRAKAGGRNRVERAFDLA 714