Pairwise Alignments

Query, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 613 a.a., exodeoxyribonuclease V subunit alpha from Rhodanobacter denitrificans MT42

 Score =  270 bits (690), Expect = 2e-76
 Identities = 215/610 (35%), Positives = 292/610 (47%), Gaps = 79/610 (12%)

Query: 103 TELIDALQHFDAIGAPNSNKPLIFE-DGRLYLERYHHFETQVASALTRLSAAALSLTPSQ 161
           T+ ++AL+  D +G   +  P + +  GR YL R    E ++A A+ R  A      P+ 
Sbjct: 63  TDALEALRRHDWVGDGTAFAPFVLDAQGRFYLWRNWQHEAKLAEAILRRCAQRTLPIPAD 122

Query: 162 PLASDNQSLLQLRRQLDCLFPSAAHTVEANIDWQKVATATALGNKLAVITGGPGTGKTTT 221
            LA D  +L              A       D Q+ A A   G +  V+TGGPGTGKTTT
Sbjct: 123 TLADDLATLF-------------AGMPRGATDGQRAAVAAVPGARFFVLTGGPGTGKTTT 169

Query: 222 VTKLLLL-----QQLGTPK--QIRLVAPTGKAAARLSESIKASKARLEQELQQASKENPQ 274
           V ++LL+        G P    I L APTGKAA RL++++   KA L+  L      +  
Sbjct: 170 VVRMLLMLLRHAHACGLPAWPSIALAAPTGKAAQRLAQAVAKGKAELQASLPGTGFHD-- 227

Query: 275 ENQVLLTALSRIPE-EASTLHRLLGVIPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMY 333
                   +  IP  EA TLHRLLG  P    F H   NPL  D+++VDEASMVDL MM 
Sbjct: 228 -------LVPHIPHAEARTLHRLLGYRPMDDSFGHGPHNPLAEDIVVVDEASMVDLAMMR 280

Query: 334 KLLSALPEHAGLILLGDQDQLASVEAGAVLADICAGLKQASTQHTEWKMRYSQAQAEQLT 393
           +LL AL   A LILLGD  QLASV+AG+VLADI A            + R     A  L 
Sbjct: 281 QLLQALRPAAVLILLGDPGQLASVDAGSVLADIVAAAP---------RQRLPPPLAGLLA 331

Query: 394 ALTGFNLSHFIHSEPKIGDSLCMLTHSHRFKGDAGIGLLASAVNRADLAGILSVWQSGLA 453
            L            P  G  L  LTHS R    AG GL        D             
Sbjct: 332 PLLQQAPDVAAGDAPLAGQVLA-LTHSWR----AGSGLQRGVEALRD-----------AP 375

Query: 454 ELTWLEHSVDHSQT-QAKISEPSNNTGLKALLAQACEQYGDYLRLLQPTHATPIHTSEPF 512
           +  WL+  +D  +     +        ++A +    E++     LLQ   A  I      
Sbjct: 376 DPAWLDALLDQRRDGDLHLRHCPTVHAMRACVDGWIERHAG---LLQSLLAPAI------ 426

Query: 513 CPPSAMEAIAKFNQYRILCAMRTGDYGVEGINLAVTKALAQAKLIQPQQEFYLGRPIIIQ 572
               A EA+ +  Q +ILCA+R G +G +GIN  V + LA    I   + +Y GRP+I+ 
Sbjct: 427 ---DAAEALQRLRQLQILCALRDGPFGAQGINELVLRRLAVRFGIDASRAWYHGRPVIVT 483

Query: 573 SNDYNLGLFNGDIGLILQDEERADRLMAHFIKAD----GKLLKVLPARLPSHETCYAMTV 628
            NDY  GLFNGD+G+ L   E A+ L   F  +D      L    P  LP+H++ +A+T+
Sbjct: 484 RNDYARGLFNGDVGIAL---EGAEGLRVWFELSDRDDNAGLRSYSPRALPAHDSAWAITI 540

Query: 629 HKSQGSEFNRVALVLPPAPSLVQWQLLTKELIYTAITRAKQHFSCLGTQQVFERASLQAT 688
           H+SQGSE+  VA++LPP       ++LT+EL+YTAI+RAK+H     T      A  +  
Sbjct: 541 HRSQGSEYREVAVLLPPD---ADNRILTRELVYTAISRAKEHAEIWSTDDALRAALARPI 597

Query: 689 QRASGLADRL 698
           +R  GL +RL
Sbjct: 598 RRQGGLRERL 607