Pairwise Alignments

Query, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 701 a.a., exodeoxyribonuclease V subunit alpha from Pseudomonas fluorescens SBW25-INTG

 Score =  377 bits (968), Expect = e-108
 Identities = 281/727 (38%), Positives = 385/727 (52%), Gaps = 98/727 (13%)

Query: 21  APLTELLKYWEKERLITALDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQHTCLVL 80
           A L +LL+ W     + ALD+ F   +  L P+   +PL +L  AL S QL   H CL L
Sbjct: 18  ADLVQLLERWVDRGWLRALDKAFVGFLHELDPH--ADPLVLLAAALTSHQLGHGHVCLDL 75

Query: 81  -------EYIVPTNPMAEPINRCQIRLS-LTELID--------ALQHFDAIGAPNS---- 120
                  ++ +   P  +      +  S L E +D        A  H  A+    S    
Sbjct: 76  FETLKAPDFALSLPPEGDLQTGAMLLPSQLLEGLDGAHWCHALAASHLVALAVDGSESAQ 135

Query: 121 NKPLIFEDGRLYLERYHHFETQVASALTRLSAAALSLTPSQPLASDNQSLLQLRRQLDCL 180
           ++PL+    RLYL RY  +E ++ +AL       L L   + +A+D      L ++LD L
Sbjct: 136 SRPLVLSGKRLYLRRYWTYERRIDTALR------LRLATQERVAAD------LPQRLDSL 183

Query: 181 FPSAAHTVEANIDWQKVATATALGNKLAVITGGPGTGKTTTVTKLLLLQQL-----GTPK 235
           F       +  IDWQK+A A A     +++TGGPGTGKTTTV +LL L Q      G+P 
Sbjct: 184 FDQPPP--DGVIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPSVESGSPL 241

Query: 236 QIRLVAPTGKAAARLSESIKASKARLEQELQQASKENPQENQVLLTALSRIPEEASTLHR 295
           +IRL APTGKAAARL+ESI       +Q L     +N +E         +IP + +T+HR
Sbjct: 242 RIRLAAPTGKAAARLTESIS------QQVLSLKVPDNVKE---------KIPTQVTTVHR 286

Query: 296 LLGVIPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHAGLILLGDQDQLA 355
           LLG  P + HFRHH GNPL LD+L+VDEASM+DL MM  LL ALP HA L+LLGD+DQLA
Sbjct: 287 LLGSRPGTRHFRHHIGNPLPLDVLVVDEASMIDLEMMANLLDALPPHARLVLLGDKDQLA 346

Query: 356 SVEAGAVLADIC----AGLKQASTQHTEWKMRYSQAQAEQLTALTGFNLSHFIHSEPKIG 411
           SVEAGAVL D+C    AG   A T+      R+ QA + +  + +G  L   +     + 
Sbjct: 347 SVEAGAVLGDLCRDAEAGFYSAETR------RWLQAVSGEDLSASG--LQEDLDGTHPLA 398

Query: 412 DSLCMLTHSHRFKGDAGIGLLASAVNRADLAGILSVWQSGLAELTWLEHSVDHSQTQAKI 471
             + ML +S RF   +GIG LA  VN           Q    E   L  +  H       
Sbjct: 399 QQVVMLRYSRRFGEGSGIGQLARWVN-----------QQNAEEARKLLAARSHDDLFCVS 447

Query: 472 SEPSNNTGLKALL----AQACEQYGDYLRLLQ---PTHATPIHTSEPFCPPSAMEAIAKF 524
            +  ++  L+ L+        E Y  YL LLQ   P+  TP    +      A + +  F
Sbjct: 448 LKGEHDYALERLVLDGQGDGAEGYRYYLNLLQSARPSADTP--REDTAWTHWAQQLLQAF 505

Query: 525 NQYRILCAMRTGDYGVEGINLAVTKALAQAKLIQPQQEFYLGRPIIIQSNDYNLGLFNGD 584
           + +++LCA+R G +GVEG+NL +T AL + +LI+  +++Y GRP+++  NDY LGL NGD
Sbjct: 506 DAFQLLCAVRKGPWGVEGLNLRITAALRKVRLIEGDEQWYEGRPVLMTRNDYGLGLMNGD 565

Query: 585 IGLIL---QDEERADRLMAHFIKADGK--LLKVLPARLPSHETCYAMTVHKSQGSEFNRV 639
           IG+ L   + +     L   F + DG+  +  VLP+RL   ET YAMTVHKSQGSEF   
Sbjct: 566 IGIALKLPESDGGPPVLRVAFPRNDGQGGVRFVLPSRLNDVETVYAMTVHKSQGSEFTHT 625

Query: 640 ALVLPPAPSLVQWQLLTKELIYTAITRAKQHFSCLGTQ-QVFERASLQATQRASGLADRL 698
           AL+LP A + V    LTKELIYT ITRAK+ FS +  +  VFE A  +  +R SGL   L
Sbjct: 626 ALILPDALNPV----LTKELIYTGITRAKRWFSLIEPRGGVFEEAVRRKVKRLSGLMLEL 681

Query: 699 WGDQSLS 705
             +  +S
Sbjct: 682 GQESEIS 688