Pairwise Alignments

Query, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 721 a.a., exodeoxyribonuclease V subunit alpha from Pseudomonas aeruginosa PA14

 Score =  357 bits (915), Expect = e-102
 Identities = 277/728 (38%), Positives = 360/728 (49%), Gaps = 98/728 (13%)

Query: 14  AGALRLKAPLTELLKYWEKERLITALDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSA 73
           A  L ++  L   L  W     + ALDR F   +  L P    +P  +L  AL S QL  
Sbjct: 21  AQPLAVRHDLLRQLDLWVARGWLRALDRAFVAFLVELQPQ--ADPRVLLAAALTSHQLGH 78

Query: 74  QHTCLVLEYIV--PTNPMAEPINRCQ-------------IRL----------SLTELIDA 108
            H CL LE  +  P   ++ P    +             +RL          SL E++D 
Sbjct: 79  GHVCLDLEATLGAPDAALSLPPEGDEGRDVLLPSQLLRGVRLDAWREALAASSLVEVVDE 138

Query: 109 LQHFDAIGAPNSNKPLIFEDGRLYLERYHHFETQVASALTRLSAAALSLTPSQPLASDNQ 168
            +  D   +  +  PL+    RLYL RY   E ++A AL         L    PLA+D  
Sbjct: 139 -RPGDPEPSETATSPLVLCAQRLYLRRYWRHELEIALALRE------RLGRQAPLAAD-- 189

Query: 169 SLLQLRRQLDCLFPSAAHTVEANI-DWQKVATATALGNKLAVITGGPGTGKTTTVTKLLL 227
               L  +L  LF  A       + DWQK+A A A     ++ITGGPGTGKTTTV +LL 
Sbjct: 190 ----LAPRLAALFAQAPTEDGQRVTDWQKLACALAARGYFSLITGGPGTGKTTTVVRLLG 245

Query: 228 LQQL-----GTPKQIRLVAPTGKAAARLSESIKASKARLEQELQQASKENPQENQVLLTA 282
           L Q      G P +IRL APTGKAAARLSESI            Q  +  P    VL   
Sbjct: 246 LLQAPAVAAGQPLRIRLAAPTGKAAARLSESIG-----------QQVRALPLAEDVL--- 291

Query: 283 LSRIPEEASTLHRLLGVIPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEH 342
              IP E +TLHRLLG  P++ HFRHH+ NPL LD+L+VDEASM+DL MM  LL ALP  
Sbjct: 292 -QAIPAEVTTLHRLLGSRPDTRHFRHHRDNPLALDVLVVDEASMIDLEMMASLLDALPPQ 350

Query: 343 AGLILLGDQDQLASVEAGAVLADICAGLKQASTQHTEWKMRYSQAQAEQLTALTGFNLSH 402
           A LILLGD+DQLASVEAGAVL D+C   ++       W    ++A  ++++  T   L  
Sbjct: 351 ARLILLGDKDQLASVEAGAVLGDLCRDAEEG------WYSAETRAWLQRVSGETWQGLRE 404

Query: 403 FIHSEPKIGDSLCMLTHSHRFKGDAGIGLLASAVNRADLAGILSVWQSGLAELTWLEHSV 462
                  +     ML HS RF   +GIG LA  VNR       ++  S  A+L  L    
Sbjct: 405 GSAQAHPLAQQTVMLRHSRRFGASSGIGRLARLVNRQQAGDARALLDSPPADLFDLRLRG 464

Query: 463 DHSQTQAKI------SEPSNNTGLKALLAQACEQYGDYL-RLLQPTHATPIHTSEPFCPP 515
           +     A++        P    G           Y  YL RL +   A  +   +     
Sbjct: 465 ERDAAFARLFVDGHPQAPGTPYG-----------YRHYLQRLAEGRPAAGLALEDGAWER 513

Query: 516 SAMEAIAKFNQYRILCAMRTGDYGVEGINLAVTKALAQAKLIQPQQEFYLGRPIIIQSND 575
            A   +  F+ +R+LCA+R G +GVEG+N  V   L +  LI+    +Y GRP+++  ND
Sbjct: 514 WAQSVLTAFDAFRLLCALRRGPWGVEGLNQRVAAELLRLGLIEADHGWYEGRPVLVTRND 573

Query: 576 YNLGLFNGDIGLILQDEERAD------RLMAHFIKADGK--LLKVLPARLPSHETCYAMT 627
           Y+LGL NGDIG+ L+  ER D       L   F + DG   +  VLP+RL   +T +AMT
Sbjct: 574 YSLGLMNGDIGIALRLPERNDDGSLRFALRVAFPRNDGSGGVRFVLPSRLVEVDTVFAMT 633

Query: 628 VHKSQGSEFNRVALVLPPAPSLVQWQLLTKELIYTAITRAKQHFSCL-GTQQVFERASLQ 686
           VHKSQGSEF   ALVLP A + V    LTKEL+YT ITRA+  FS +     VFE A  +
Sbjct: 634 VHKSQGSEFAHTALVLPDALNPV----LTKELVYTGITRARDWFSLVESLPGVFEEAVRR 689

Query: 687 ATQRASGL 694
             +R SGL
Sbjct: 690 KVRRLSGL 697