Pairwise Alignments

Query, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 695 a.a., exodeoxyribonuclease V subunit alpha from Burkholderia phytofirmans PsJN

 Score =  278 bits (711), Expect = 6e-79
 Identities = 209/630 (33%), Positives = 310/630 (49%), Gaps = 106/630 (16%)

Query: 122 KPLIFE-DGRLYLERYHHFETQVASALTRLSAAALSLTPSQPLASDNQSLLQLRRQLDCL 180
           +PL+ +  GRLYL RY+ +E ++A AL   + A   +       + ++ LL+        
Sbjct: 111 RPLVVDGQGRLYLARYYDYERRLARALVAHARADEGVERLANAQTLHERLLRY------- 163

Query: 181 FPSAAHTVEANIDWQKVATATALGNKLAVITGGPGTGKTTTVTKLLL-LQQLGTPKQIRL 239
                   +  +DWQ+VA   AL  +L +++GGPGTGKTTTV  +L  L    T  +I L
Sbjct: 164 ---FGPPKDNEVDWQRVAAVMALSGQLTIVSGGPGTGKTTTVVGVLACLLDARTDLRIAL 220

Query: 240 VAPTGKAAARLSESIKASKARLEQELQQASKENPQENQVLLTALSRIPEEASTLHRLLGV 299
            APTGKAA R+ E++ A    L  EL                  +R+P+ + TLHRLLG 
Sbjct: 221 AAPTGKAAQRMQEALLARAGDLPPELA-----------------ARLPQTSYTLHRLLGS 263

Query: 300 IPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHAGLILLGDQDQLASVEA 359
            P    FRHH+ NPL  D++++DEASM+D+ M   LL A+     L++LGD+DQLA+VEA
Sbjct: 264 GPGG-RFRHHRDNPLPYDVVVIDEASMIDVAMAAHLLDAIAPQTRLVMLGDKDQLAAVEA 322

Query: 360 GAVLADICA-------GLKQAS-------TQHTEWKMRYSQAQAEQLTALT--------- 396
           GAV A++ A       GL++ +        Q T+     S+   E+ T  +         
Sbjct: 323 GAVFAELSARPTFTQGGLQRIADALGIDEKQLTQALPGASRGLGEEPTDFSAQSYVPNDD 382

Query: 397 ---------GFN--------------LSHFIHSEP---KIGDSLCMLTHSHRFKGDAGIG 430
                    GF+               SH   + P    + D +  L  ++RF  ++ IG
Sbjct: 383 LFAYADSPGGFDEPPGGDLFESAAPPPSHIATASPMQNPLADCVVWLERNYRFGLESPIG 442

Query: 431 LLASAVNRADLAGILSVWQSGLAELTWLEHSVDHSQTQAKISEPSNNTGLKALLAQACEQ 490
            L+ A+     +  L V ++   E      +  +  T A ++E +      A LA     
Sbjct: 443 RLSLAIRNGSASAALDVLRTDPTETC---AAALYEDTHATLTERT-----VARLAAGFAP 494

Query: 491 YGDYLRLLQPTHATPIHTSEPFCPPSAMEAIAKFNQYRILCAMRTGDYGVEGINLAVTKA 550
           Y D L       A           P  +      N++RILCA R+G  GV+ +N A+   
Sbjct: 495 YADALATALAAEA-----------PDPLPLFDALNRFRILCATRSGPRGVDQVNAAMAAQ 543

Query: 551 LAQAK--LIQPQQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEERADRLMAHFIKADGK 608
           + +A    +    +++ GRP+++  NDY LGLFNGDIG+ L     A  L  +F   DG 
Sbjct: 544 VRRAAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGANGA--LRVYFRTGDGG 601

Query: 609 LLKVLPARLPSHETCYAMTVHKSQGSEFNRVALVLPPAPSLVQWQLLTKELIYTAITRAK 668
           L  V PA LP H+T +A+TVHKSQGSEF    L+LP   S    ++L++EL+YTAITRA+
Sbjct: 602 LRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLMLPSVFS----RVLSRELVYTAITRAR 657

Query: 669 QHFSCLGTQQVFERASLQATQRASGLADRL 698
           +    +G + V  +A    TQR SGLA R+
Sbjct: 658 ERVEVIGARAVLAQAIATPTQRDSGLAARI 687