Pairwise Alignments

Query, 544 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 315 a.a., response regulator receiver modulated diguanylate cyclase (RefSeq) from Shewanella sp. ANA-3

 Score =  116 bits (291), Expect = 1e-30
 Identities = 86/296 (29%), Positives = 145/296 (48%), Gaps = 16/296 (5%)

Query: 255 KVLLVDDQQSMVDYFSSLLRSHGLMVRGMTKPEQVIPTLEQFEPDLFIFDLYMPGVNGLE 314
           K+L+VDDQ   +     L      M    T  EQ +   ++ +PDL + D+ MP + G E
Sbjct: 17  KILIVDDQPLNIKILHQLFHEEYEMFMA-TSGEQALQVCQKMQPDLVLLDIEMPEMTGYE 75

Query: 315 LARMIRQLDKYTSSPILVLSSDDTMQNKVSIIQAGSDDLISKQTAPSLFVTQVISR--AQ 372
           + + ++      +  ++ +++      +V   Q G+ D I K   P +   +V ++   +
Sbjct: 76  VCQRLKADPATANIGVIFITAHFDEMEEVKGFQLGAVDFIHKPINPIITSARVKNQYLLK 135

Query: 373 RGHDI-RSSASRDSLTGLLNHTQILVAA----RHCINLAKRANSSVCIAMLDLDHFKQVN 427
           R  D+  S A  DSLTG+ N  Q         RHC     R  + + + MLD+D FK+ N
Sbjct: 136 RQSDVLHSIALLDSLTGVANRRQFEQRLPEIWRHC----SRNQAYLSVIMLDVDFFKRYN 191

Query: 428 DTYGHSGGDKVLLAFAHLLQQSL-RAADFMGRYGGEEFMLVIPDMPAPLVIAKVNAIRES 486
           D YGH  GD+ L   A  ++  L R  D + RYGGEEF+ ++P+      +    A+ ++
Sbjct: 192 DRYGHQEGDQCLRLVADAVKGMLKRPNDLIARYGGEEFICILPEAKLSGAMRLAQAMVDA 251

Query: 487 FSNIVFVEEGAEF-KVTLSGGLAFSTECHE--FQECLLLADKNLYEAKRTGRNRII 539
              +      +EF +VT+S G+A      E  ++  + +AD+ LY AK  GRN+++
Sbjct: 252 VHALHLEHLDSEFGEVTVSAGIATIQPLAEQSWESLVEVADQQLYIAKHNGRNQVV 307