Pairwise Alignments

Query, 654 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  395 bits (1015), Expect = e-114
 Identities = 249/526 (47%), Positives = 330/526 (62%), Gaps = 46/526 (8%)

Query: 173 SVEAMLRRSESEIRQVLPHFSVDKILGSSMDIFHRNPAHQASLLDKLDRKYE-SQIQVAS 231
           S E  L RS+  I      + +  I G   ++        A+ L+K+DR  + + + +  
Sbjct: 136 SAELQLSRSQEAIWIKADLYPIKAINGQLQNVVVLLQDITAAKLEKIDRSGQMNAVNLTQ 195

Query: 232 CHFRLTASPIILTSGERLGSVVEW-LDRT----------EEVQVEQEIARIVAAAAAGDF 280
                T    ILT+ +     V + LD            E+ +  QE         +G+F
Sbjct: 196 AVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQSQEYQHFWQRLRSGEF 255

Query: 281 SQRVDSH---GKQGFFLMLANSLNSLIETSDRG----------------LQDVARVLMAM 321
              VD +   GK G  + +  S N ++++  +                 + +V RV+ A+
Sbjct: 256 F--VDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATNVTQRKMVVNEVKRVMTAL 313

Query: 322 AEGDLTTRIYNEYEGTFNDLKNYSNQTAEKLSYMIRDIQKAADTINTASSEIAQGNADLS 381
           + GDL+ ++ + +EG F +L    +Q    L  +I DI   A TI  A++EI+ GN DLS
Sbjct: 314 SSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKLAATEISNGNTDLS 373

Query: 382 SRTEEQASSLEETSASMEELTGTVKLNADNASQANALASKAADVAEDGGELIQQVVQTMA 441
           SRTE+QAS+LE+T++SMEEL  TV+ N+DNA QAN LA KA ++A  GGELI+QVV TMA
Sbjct: 374 SRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTMA 433

Query: 442 SINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAN 501
           SINESA+KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF+VVASEVRSLAQRSAN
Sbjct: 434 SINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSAN 493

Query: 502 AAKDIKALISDSVSKIDSGNNLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGIDE 561
           AAKDIKALISDSVSKI +GN LV +SG TMK+IV++IKRV+D+MA+IASAS EQA GI+E
Sbjct: 494 AAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQATGINE 553

Query: 562 IGKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADSVANFKV-DEETRSARHTTELK 620
           + +AV QMDEMTQQNAALVEEAAAA+ES+ +QA+QL D VA F++ D++T +      + 
Sbjct: 554 VNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHVAMFRLPDQDTSAPSLLKAVN 613

Query: 621 KIPQKIP-----------TLARVTPKPKAMT-PKLNKADQDEWEEF 654
           K PQ  P           T A++T K  +   P +  A  +EWE F
Sbjct: 614 KRPQSAPVTRHPASHIAKTPAKITAKASSRAQPVMQVAHDEEWESF 659