Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 695 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  478 bits (1231), Expect = e-139
 Identities = 294/709 (41%), Positives = 428/709 (60%), Gaps = 37/709 (5%)

Query: 1   MSINMAEFHQVFFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFT 60
           M I++++F QVFFEES E L  ME  L+ +++ +PDPE +NTIFRAAHSIKGGS  FGF 
Sbjct: 1   MDIDLSQFSQVFFEESIEGLAIMESELLKLDVAAPDPETINTIFRAAHSIKGGSATFGFM 60

Query: 61  ALSSVTHVMENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEFAK 120
            +++ TH++E LLD++R G  ++    +D+LL +VD L  +      +   +  ++   +
Sbjct: 61  QVANYTHLLETLLDEIRDGRRQMQPDHVDMLLLSVDLLRGMFEALMSQAEFNDPKLPELE 120

Query: 121 NQLVAALNGDPFLTTS---PEAIPATPTKTEITQ----TAVVVSDASHQDDIGFGFFEDD 173
            +L   L   P  T S   P+A  A+ +KT   Q        +    +   + F      
Sbjct: 121 LRLNNTLANQPSQTQSISPPQATMASDSKTLCWQIDFKAGADIMRCGNDPMLMFAELASK 180

Query: 174 VELTLAIENQDFGFFDEAFTAKEISVEDINKTLLDSQLVTNTEPDDDLGFGFFESLTPES 233
             LT  +    F  +D+ F  +   +    + + D  L    E         FE +  E 
Sbjct: 181 GTLTAELLPVSFPAWDD-FDPEACYLHWRLRLITDEPLEKLKE--------VFEWVEDEC 231

Query: 234 VDSEINALVHIQANKAIAAIEPLSKPVNSPSVPKIPRYTGNTAESTKVAPADPVDPSPVL 293
              EI+      A  A  + E LS    S   P +         +  V    P   +   
Sbjct: 232 ---EISYQQTAAAPSADTSTEMLSPSPQSEVDPPVA--------APDVIALTPQVQALAT 280

Query: 294 NKSVASGTKSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIG--NE 351
           +K+VAS  +S   AA K G +S+    +RV T KID L+N+ GELVITQ+ML  IG  +E
Sbjct: 281 DKAVASQKQSA--AAAKSGESSS----IRVSTEKIDMLINMVGELVITQAMLGQIGQQDE 334

Query: 352 ISGELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLV 411
           I+ E    L+  L +L  +TR++QE+VM +RMLP+SF FNRF RLVRD+  QLGK V L+
Sbjct: 335 INQESLLLLQQGLEQLASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELI 394

Query: 412 IEGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNI 471
           ++G +TE+DK ++EK+VDP+ HLVRNSLDHG+E PE R   GK+E   + L A  +GG I
Sbjct: 395 LKGEDTELDKTVLEKIVDPMVHLVRNSLDHGLESPEARLAQGKSETGTIMLNAYHQGGCI 454

Query: 472 VIAVHDDGAGLHREKILQKARENNM-SVTDNMPDKQIWQLIFAAGFSTAKEITDVSGRGV 530
           +I + DDGAGL+  KIL+KAR+  +    + + ++ I QLIF  GFSTA  ++D+SGRGV
Sbjct: 455 IIEIADDGAGLNTHKILEKARQKGLVGAEEELSEEAIHQLIFRPGFSTADAVSDLSGRGV 514

Query: 531 GMDVVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIE 590
           GMDVV+RNI  L G I++ S AG+G+ F I+LPLTLAI+DG  + +GK IY++PLV I E
Sbjct: 515 GMDVVKRNIHELNGSIELKSEAGKGSRFTIRLPLTLAILDGQLIRIGKHIYVVPLVSIYE 574

Query: 591 SIQPHTEQLKYLAQ-ERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFG 649
           S+Q  T ++  L+    LIR+R+EYLP++ +++       A+  ++G+V++++ NN++ G
Sbjct: 575 SLQVPTNRINRLSDGHELIRLRDEYLPVIKMYREFNHDADAREIKDGLVMVVDHNNEKAG 634

Query: 650 LCVDALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLAQ 698
           L VD L+ QQQVVIKSLE++Y RIPG+SGATI+GDG+VALI+DV  L +
Sbjct: 635 LLVDELLAQQQVVIKSLEENYTRIPGISGATILGDGTVALIIDVAGLVK 683