Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1030 a.a., CheA signal transduction histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  307 bits (787), Expect = 1e-87
 Identities = 175/472 (37%), Positives = 275/472 (58%), Gaps = 12/472 (2%)

Query: 232  ESVDSEINALVHIQANKAIAAIEPLSKPVNSPSVPKIPRYTGNTAESTKVAPADPVDPS- 290
            E  + +  A+V I +     A     KP        +     +   +  VAPA P  P+ 
Sbjct: 547  EDAEDDDAAVVTISSVTGTPAPAAAVKPAAPAPASAVAAPAASAKPAAPVAPARPAAPTA 606

Query: 291  PVLNKSVASGTKSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIG- 349
            P    + A G  +   A  ++   +   +T+RV+  K+D L+NL GEL+I ++  T++  
Sbjct: 607  PSAPAAPAGGQGAAAAAQAQQAGAAKASSTIRVDHEKLDHLMNLIGELIINRNRYTMLAR 666

Query: 350  ------NEISGELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQ 403
                  N +  E+ + L      + R + ++Q+ +M VRM+PVS VF+RF RLVRDLS +
Sbjct: 667  RLEDDTNVVIAEVAQDLSETTYAMARISDDLQDTIMKVRMVPVSSVFSRFPRLVRDLSRK 726

Query: 404  LGKNVNLVIEGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLR 463
             GK V+L++EG  TE+DK ++E + DPL HL+RN++DHG+E  + R   GK    +++LR
Sbjct: 727  SGKEVDLILEGEETELDKSVVEVIGDPLVHLIRNAVDHGVESEDERVAKGKKAKGKVTLR 786

Query: 464  ASQRGGNIVIAVHDDGAGLHREKILQKARENNMSVTDN---MPDKQIWQLIFAAGFSTAK 520
            A  +G ++ I + DDG G+  EK+ + A    +   D    M D++  +LIFA GFS+A+
Sbjct: 787  AYHKGNSVAIEIEDDGKGIDPEKMREVAVRKGIITPDEAKAMDDREAMELIFAPGFSSAE 846

Query: 521  EITDVSGRGVGMDVVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQI 580
            +ITD+SGRGVGMDVVR NI+ L G + I S  G+G  F + LPLTLAI+D + V+V  ++
Sbjct: 847  KITDISGRGVGMDVVRTNIKNLKGSVSIHSEIGKGTRFTLSLPLTLAIIDALMVNVAGEM 906

Query: 581  YILPLVHIIESIQPHTEQLKYLAQERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVL 640
            Y +PL  + E+ +    +L  +   + + +R E L + +L +L+ + P     +   VV+
Sbjct: 907  YAIPLDAVSETTKIEARRLTDVKGRKAVTLRGEVLGIASLSELLGL-PKGDKQDVLSVVV 965

Query: 641  LESNNKRFGLCVDALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILD 692
            +  N++R GL VD L+ +Q++VIK L  +   + G+SGATIMGDGSV LILD
Sbjct: 966  IHDNDRRLGLVVDRLLERQEIVIKPLGAYLGDLKGISGATIMGDGSVILILD 1017



 Score = 72.8 bits (177), Expect = 8e-17
 Identities = 81/336 (24%), Positives = 132/336 (39%), Gaps = 36/336 (10%)

Query: 12  FFEESHEHLENMEQLLIAINLQSPDPEEL-NTIFRAAHSIKGGSGIFGFTALSSVTHVME 70
           F +E+ E  EN+   L+ +     +  EL N +FR  H++KG SGI GF  L+S+TH  E
Sbjct: 222 FIDEAREMAENLSSGLLELERNPTEQGELVNDLFRFFHNLKGNSGIIGFAELNSLTHEAE 281

Query: 71  NLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEFAKNQLV-----A 125
            LL+ VR+G    S  ++DLLL  VD L    +L    +P+      F  + ++     A
Sbjct: 282 TLLNNVRRGEMTGSHELVDLLLLVVDLLE---ALVTRIDPVSGNVTPFDISVILECLRKA 338

Query: 126 ALNGDPFLTTSPEAIPATPTKTEITQTAVVVSDASHQDD--------IGFGFFEDDVELT 177
              GD    T PE +    +   + +     + A   DD        +  G+  DDV L 
Sbjct: 339 VAGGD---ITLPEGLGGRRSGGSVAEAPAPEAGAPGTDDDADAPSPPVAPGYDPDDVALF 395

Query: 178 LAIENQDFGFFDEAFTAKEISVEDINKTLLDSQ---LVTNTEPDDDLGFG---FFESLTP 231
           +    Q     +     K ++V+   +  +D+    LVT       +G      +   T 
Sbjct: 396 INTVRQQMD--NVGVALKTLAVDGTQREYVDALYRCLVTIQNSSGYMGLDDIRVYAERTA 453

Query: 232 ESVDS------EINALVHIQANKAIAAIEPLSKPVNSPSVPKIPR--YTGNTAESTKVAP 283
             VD       + + +V +   +     + L K +   S+P   +       A   K AP
Sbjct: 454 GLVDQARFSGMDFSLMVDLMEQETSIIGDMLEKQIARISMPAPAQAPEAAPAAPEAKAAP 513

Query: 284 ADPVDPSPVLNKSVASGTKSTPTAATKKGNTSTQDA 319
           A   +   V     A    +T   A    +   +DA
Sbjct: 514 APAAEAKAVAAPPAAKTDVTTDARAAASVDAEDEDA 549



 Score = 69.7 bits (169), Expect = 7e-16
 Identities = 33/91 (36%), Positives = 53/91 (58%)

Query: 12  FFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFTALSSVTHVMEN 71
           F  E+ EHLE +E  L+ +     +   LN IFR  HS+KG SG  G   ++ + H  EN
Sbjct: 14  FIVEAKEHLETIEPNLLELEKAPDNLALLNEIFRPMHSLKGASGFLGLNRINGLAHRAEN 73

Query: 72  LLDKVRKGTFELSSGIIDLLLKTVDTLSHIL 102
           ++D++RKG   ++S I+D++L   D L  ++
Sbjct: 74  IMDELRKGDMTVTSEIMDVILSATDALRQMV 104