Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 724 a.a., CheA signal transduction histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  376 bits (966), Expect = e-108
 Identities = 251/709 (35%), Positives = 385/709 (54%), Gaps = 39/709 (5%)

Query: 12  FFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFTALSSVTHVMEN 71
           F EE+ + L  +E  L+ +  Q  D + +  +FRA H+IKG   +FGF  ++  TH +E 
Sbjct: 12  FIEEAQDLLAELETALLELEAQPDDRDLVARVFRAMHTIKGSGAMFGFDDIAHFTHDVET 71

Query: 72  LLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEFAKNQLVAALNGDP 131
           + D+VR G   ++  ++DL L + D ++ +L+     +  D          + A+L    
Sbjct: 72  VFDRVRNGEVPVTRQLLDLTLASRDHIAQLLNCAVTGDAPDLAHAA----AITASLRALV 127

Query: 132 FLTTSPEAIPAT-------PTKTEITQTAVVVSDASHQDDIGFGFFEDDVELTLAIENQD 184
            +   P   PA        P +TE        +       +    F     L L  E +D
Sbjct: 128 PVAAPPADAPADGAADGECPAETEAPCPPCARTWRVRFRPVPSILFSGANPLALLDELRD 187

Query: 185 FG------FFDEAFTAKEISVEDIN---KTLLDSQLVTNTEPDDDLGFGFFESLTPESVD 235
            G       F E     E+  E  +     LL S+  +N     D+     +    + + 
Sbjct: 188 MGGAQVFPHFSEVPGLDELQPELCHVWWDVLLSSE--SNEAAIRDVFLFVEDDADVDILL 245

Query: 236 SEINALVHIQANKAIAAIEPLSKPVNSPSVPKI---PRYTGNTAESTKVAPADPVDPSPV 292
            +   +V   A K +  I      V+S  + ++    R  G       V P + VD +  
Sbjct: 246 VDDARIVDDAAYKRLGEILIERGDVSSDDLHRVLDEQRPLGRLLTDAGVVPPERVDAALA 305

Query: 293 LNKSVASGTKSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEI 352
             ++V +  +S    +T + ++    A++RV  SK+D LV+L GELVI Q+ L+   +  
Sbjct: 306 EQQAVRTIRQSRDKESTARDDSG---ASIRVAASKLDFLVDLVGELVIVQAQLSQAAHLR 362

Query: 353 S--GELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNL 410
           S  G LG      + ELER + E+++  + +RMLP+   F++F RLVRDLS +LGK+V L
Sbjct: 363 SDPGLLG-----LVEELERLSDELRDTTLGIRMLPIGTTFSKFRRLVRDLSAELGKDVEL 417

Query: 411 VIEGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGN 470
           V  GG TE+DK +IE+L DPL H +RNS+DHG+E P+VR   GK     ++L A+  GG 
Sbjct: 418 VTLGGETELDKTVIERLGDPLVHCLRNSMDHGVESPDVRAAAGKPRTGTVTLSAAHAGGE 477

Query: 471 IVIAVHDDGAGLHREKILQKARENNMSVTD-NMPDKQIWQLIFAAGFSTAKEITDVSGRG 529
           ++I + DDGAG+   ++L+ AR   +   D  +P ++  +LIFA GFSTA+++T VSGRG
Sbjct: 478 VLITIADDGAGIDPARVLEIARRRGVIAPDVELPAREAIELIFAPGFSTAEKVTSVSGRG 537

Query: 530 VGMDVVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHII 589
           VGMDVV+R+IEAL GRI++DS  G+G T  I+LPLTLAI+DG+ V VG + Y++PL H +
Sbjct: 538 VGMDVVKRSIEALRGRIELDSAVGRGTTLTIRLPLTLAIIDGLQVLVGGESYVIPLNH-V 596

Query: 590 ESIQPHTEQLKYLAQERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFG 649
           E    H+       ++R+I +R E +P + L +L   +  A   E+  VV++++   RFG
Sbjct: 597 EECAEHSTPSSADGRQRIINLRGEIVPYIRLRELFASSGPAPAIEQ--VVVVDAQGSRFG 654

Query: 650 LCVDALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLAQ 698
           L VD +VG+ Q VIKSL + Y+ +PG+SGATI GDGS+ALILDV  L Q
Sbjct: 655 LVVDCVVGEHQTVIKSLGRIYKDVPGISGATIKGDGSMALILDVPGLVQ 703