Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 659 a.a., Chemotaxis protein histidine kinase and related kinases from Sphingomonas koreensis DSMZ 15582

 Score =  295 bits (755), Expect = 5e-84
 Identities = 159/423 (37%), Positives = 252/423 (59%), Gaps = 12/423 (2%)

Query: 288 DPSPVLNKSVASGTKSTPTAATKKGNTSTQ-------DATLRVETSKIDTLVNLAGELVI 340
           +P  V      +GT + P A  + G+ S +       D ++RV   ++D L++  GELVI
Sbjct: 232 EPLDVQTDEAPAGTPAPPAATAEAGSPSARATAAAKADESVRVPAERLDELMDRVGELVI 291

Query: 341 TQSMLTLIGNEISGELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDL 400
            QS L+ +      ++   L++   E+ER   E+++ +M +RM+PV+ +FNRF RL+ DL
Sbjct: 292 AQSRLSQLAQGSGHDMV--LRSVSEEIERLAGELRDTMMVLRMVPVASLFNRFRRLIHDL 349

Query: 401 SDQLGKNVNLVIEGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQL 460
           S + GK++ L+ EG  TE+DK +IE+L DP+ HL+RN+ DHG+E P+ R   GK     +
Sbjct: 350 SRETGKSIELLTEGEATEVDKTVIERLADPMVHLIRNACDHGLETPDQRAAAGKDSTGTV 409

Query: 461 SLRASQRGGNIVIAVHDDGAGLHREKILQKARENNMSVTDN-MPDKQIWQLIFAAGFSTA 519
            L A Q GG +VI + DDG G+ R+++  KA    +      + D+ + Q+IF  GFSTA
Sbjct: 410 RLSAHQAGGEVVITIQDDGRGIDRDRVRAKAEAQGLIQPGQLLADQDLLQMIFHPGFSTA 469

Query: 520 KEITDVSGRGVGMDVVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQ 579
            ++T++SGRGVGMDVV+R IE+L G ID+ S  G+G+T  +++PLTLAI+DG+ V VG  
Sbjct: 470 AQVTNLSGRGVGMDVVKRTIESLRGAIDVASTPGKGSTITLRIPLTLAIIDGLLVRVGTG 529

Query: 580 IYILPLVHIIESIQPHTEQLKYLAQERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVV 639
            Y++PL  + E ++   E+         I +R+  +P L L ++          ++  +V
Sbjct: 530 RYVIPLAAVEECLELPLEEDLRTRGRSFITLRDSLVPFLRLREMFACGTRPDAFQK--IV 587

Query: 640 LLESNNKRFGLCVDALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLAQQ 699
           ++ +  +R GL VD ++G  Q VIKS+   +  +   +GATI+GDG +ALILDV  L   
Sbjct: 588 VIATGTERVGLVVDQIIGSHQTVIKSMSALHHNVTTFAGATILGDGGIALILDVAQLVDI 647

Query: 700 IKN 702
            +N
Sbjct: 648 GRN 650



 Score = 54.3 bits (129), Expect = 2e-11
 Identities = 27/85 (31%), Positives = 48/85 (56%)

Query: 12 FFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFTALSSVTHVMEN 71
          F  E+ + L+ +E  L+ +  +  D E ++ +FR  H++KG   +FGF AL++ TH  E 
Sbjct: 10 FRVEAGDLLDQIEHGLLDLTGRLDDRELVDEVFRGLHTLKGSGAMFGFDALATFTHHCET 69

Query: 72 LLDKVRKGTFELSSGIIDLLLKTVD 96
            D+VRKG    +  ++ ++L   D
Sbjct: 70 AFDRVRKGLAPATQELVAVILSARD 94