Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1089 a.a., chemotaxis protein CheA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  307 bits (787), Expect = 2e-87
 Identities = 174/448 (38%), Positives = 269/448 (60%), Gaps = 18/448 (4%)

Query: 257  SKPVNSPSVPKIPRYTGNTAESTKVA-PADPVDPSPVLNKSVASGTKSTPTAATKKGNTS 315
            +KPV + + P       + A +  VA P  P  P+P    + A+     P A   K ++ 
Sbjct: 635  AKPVAAATTPPKAAAASSAAPAKAVATPPRPAAPAPAAASAPAAAPAGGPPAGGSKASS- 693

Query: 316  TQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEIS--------GELGERLKTALVEL 367
                T+RV+  K+D L+NL GEL+I ++  +++   +          E+ + L      +
Sbjct: 694  ----TIRVDHEKLDHLMNLIGELIINRNRYSMLARHLEEGGASVNVAEVAQNLSETTYAM 749

Query: 368  ERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLVIEGGNTEIDKGMIEKL 427
             R + ++Q+ +M VRM+PVS VF+RF RLVRDLS + GK V+LV+EG  TE+DK ++E +
Sbjct: 750  ARISDDLQDTIMKVRMVPVSSVFSRFPRLVRDLSRKSGKEVDLVLEGEETELDKSVVEVI 809

Query: 428  VDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNIVIAVHDDGAGLHREKI 487
             DPL HL+RNS+DHG+E  E R   GK     ++LRA  +G ++ I + DDG G+  EK+
Sbjct: 810  GDPLVHLIRNSVDHGVEPEEERIAKGKKPKGVVTLRAFHKGNSVAIEIEDDGKGIDPEKM 869

Query: 488  LQKARENNMSVTDN---MPDKQIWQLIFAAGFSTAKEITDVSGRGVGMDVVRRNIEALGG 544
             + A    +   +    M D++  +LIFA GFS+A++ITD+SGRGVGMDVVR NI+ L G
Sbjct: 870  REVAVRKGIVTPEEAKAMDDREAMELIFAPGFSSAEKITDISGRGVGMDVVRTNIKNLKG 929

Query: 545  RIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIESIQPHTEQLKYLAQ 604
             + I S  G+G  F + LPLTLAI+D + V+V  Q+Y +PL  + E+ +    +L  +  
Sbjct: 930  SVSIHSEVGKGTRFTLSLPLTLAIIDALMVNVAGQMYAIPLDAVSETTKIEARRLTDVKG 989

Query: 605  ERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFGLCVDALVGQQQVVIK 664
             + + +R E L +++L +L+ + P +   +   VV++  N++R GL VD L+ +Q++VIK
Sbjct: 990  RKAVTLRGEVLGIVDLSELLAL-PRSDAQDVLSVVVIHDNDRRLGLVVDRLLERQEIVIK 1048

Query: 665  SLEKHYRRIPGVSGATIMGDGSVALILD 692
             L  +   + G+SGATIMGDGSV LILD
Sbjct: 1049 PLGAYLGDLKGISGATIMGDGSVILILD 1076



 Score = 72.0 bits (175), Expect = 1e-16
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 12  FFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFTALSSVTHVMEN 71
           F  E+ EHLE +E  L+ +     +   LN IFR  HS+KG SG  G   ++ + H  EN
Sbjct: 14  FIVEAKEHLETIEPNLLELEKAPDNLALLNEIFRPMHSLKGASGFLGLNRMNQLAHRAEN 73

Query: 72  LLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEFAKNQLVAALNGDP 131
           +LD++RKG   ++S I+D++L   D L  ++             +E     + A + G  
Sbjct: 74  ILDELRKGAMVVTSEIMDVILAVTDALRQMIDNLESSGQEGDVAIESLITTIDAIMAGGG 133

Query: 132 FLTTSPEAIPATP 144
            +  +P A PA+P
Sbjct: 134 AVPAAP-AAPASP 145



 Score = 64.7 bits (156), Expect = 2e-14
 Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 3/94 (3%)

Query: 12  FFEESHEHLENMEQLLIAINLQSPDPEE--LNTIFRAAHSIKGGSGIFGFTALSSVTHVM 69
           F +E+ E  E +   L+ +  + PD ++  +N +FR  H++KG SGI GF  L+ +TH  
Sbjct: 249 FIDEAREMTEQLGTGLLELE-RHPDEKDDRVNDLFRFFHNLKGNSGIIGFRELNGLTHEA 307

Query: 70  ENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILS 103
           E LL+ +R+G  + S+ ++DLLL  VD +  +++
Sbjct: 308 ETLLNNIRRGEMQSSAELVDLLLFVVDVIDALVN 341