Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 766 a.a., chemotaxis protein CheA from Burkholderia phytofirmans PsJN

 Score =  526 bits (1354), Expect = e-153
 Identities = 313/762 (41%), Positives = 445/762 (58%), Gaps = 64/762 (8%)

Query: 1   MSINMAEFHQVFFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFT 60
           M++++ +F+Q FF+E+ E L  MEQLL+ +++  PDPE+L  IFRAAHSIKGG+  FGFT
Sbjct: 1   MTLDITQFYQTFFDEADELLAQMEQLLLNLDIAHPDPEDLAAIFRAAHSIKGGAATFGFT 60

Query: 61  ALSSVTHVMENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEF-- 118
           AL+  TH++E+LLD+ R     L   +ID  L+T D LS  L+ YR     D    +   
Sbjct: 61  ALTETTHILESLLDRARNNELVLRKDMIDTFLETKDVLSGQLADYRASAEPDAATAKAIC 120

Query: 119 AKNQLVAALNGD---PFLTTSPEAIPATPTKTEITQTAVVVSDASHQDDIGFGFFEDDVE 175
           AK + + A + D   P    +P A  A P  T+  Q A  V   +  + +     +   E
Sbjct: 121 AKLERLNAESRDGAAPAAAAAPAAASAAPVATQAVQAAEAVQGGTPPEHVVEQAVQAAGE 180

Query: 176 LT--------------------LAIENQDFGFFDEAFTAKEIS----------------- 198
            T                    L I  +  G  D+   A+E+                  
Sbjct: 181 WTDGEPAQTGQAAGAGEETGPHLKITLRGVGEKDQELLAEELGNLGNIVGQVKSGGDLTL 240

Query: 199 --VEDINK---------TLLDSQLVTN--TEPDDDLGFGFFESLTPESVDSEINALVHIQ 245
               D+            + +SQ+V    T P DD   G  E  TP++ DS  +    +Q
Sbjct: 241 WLATDVTSDDIIAVCCFVIDESQIVIGRGTAPADDTQQG--EPGTPDAADS--SPAQAVQ 296

Query: 246 ANKAIAAIEPLSKPVNSPSVPKIPRYTGNTAESTKVAPADPVD----PSPVLNKSVASGT 301
             +A  A  P S+   +           +T  +   A A P      P+P    + A   
Sbjct: 297 VTQADHAASPASEAGTAAPASTATHGLFDTPAAQAPAAAQPAAATSAPAPAQASAAAPAE 356

Query: 302 KSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEISGELGERLK 361
           +    A         + +++RV   K+D L+NL GELVITQ+ML    +     L +RL 
Sbjct: 357 QDRKAARPAAAAGGAEGSSIRVGVEKVDQLINLVGELVITQAMLAETTSTFDPALHDRLF 416

Query: 362 TALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLVIEGGNTEIDK 421
             + +LERN R++QEAVMS+RM+P+ +VF+RF RLVRDL+ +LGK V LV  G  TE+DK
Sbjct: 417 NGMAQLERNARDLQEAVMSIRMMPMDYVFSRFPRLVRDLAAKLGKEVELVTFGQATELDK 476

Query: 422 GMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNIVIAVHDDGAG 481
            +IE+++DPLTHLVRNSLDHGIE  E RR  GK    QL L A+  GGNIVI V DDGAG
Sbjct: 477 SLIERIIDPLTHLVRNSLDHGIETVEARRAAGKDSTGQLVLSAAHHGGNIVIEVSDDGAG 536

Query: 482 LHREKILQKARENNMSVTDNMPDKQIWQLIFAAGFSTAKEITDVSGRGVGMDVVRRNIEA 541
           L R+KIL KA +  M V++ M D+++W LIF  GFSTA+++TDVSGRGVGMDVV+RNI++
Sbjct: 537 LRRDKILAKAAKQGMQVSETMSDEEVWNLIFLPGFSTAEQVTDVSGRGVGMDVVKRNIQS 596

Query: 542 LGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIESIQPHTEQLKY 601
           +GG ++I S AG+G+T  I LPLTLAI+DGMSV VG +I+ILPL  ++ES+QP  E +  
Sbjct: 597 MGGHVEITSHAGKGSTTRIVLPLTLAILDGMSVKVGNEIFILPLNFVMESLQPQAEDIYT 656

Query: 602 LAQ-ERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFGLCVDALVGQQQ 660
           +A  ER++RVR EYLPL+ LH++  +    + P +GIV ++++  +RF + +D LVGQQQ
Sbjct: 657 VANGERVVRVRGEYLPLVALHEVFNVEGAKQEPTQGIVTIMQTEGRRFAMLIDELVGQQQ 716

Query: 661 VVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLAQQIKN 702
           VV+K+LE +YR++ G+S ATI+GDGSVALI+DV +L ++ ++
Sbjct: 717 VVVKNLETNYRKVHGISAATILGDGSVALIVDVAALNRETRH 758